Ss1.1-Emb1-C0005215_F09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATCCTAAAATTCAGAGCATCTATTTGGAAAAGTTTCCAATCTTTAAGGCTCGTTTTAG TGCTAATGGAGAAGAGGTTTTAGCCACGAGTACTCACAGCAGGGTGCTTTATGTCTATGA TATGCTGGCTGGAAAGCTAATTCCTGTGCATCAAGTAAGAGGCTTGAAGGAGAAGATAGT GAGGCGCTTCGAAGTCTCCCCAGATGGGTCCTTCCTGCTTATAAATGGTGTTGCTGGATA TTTGCATTTGCTGTCAATGAAGACTAAGGAACTGATTGGCAGTATGAAAATTAATGGAAG GATTGCAGCATCCACGTTCACGTCAGATAGTAAGAAAGTATATGCCTCTTCAGCGGATGG GGAAGTTTATGTTTGGGATGTGAACTCTAGGAAGTGTCTTAACAGATTTGTTGATGAAGG CAGTTTATATGGCTTAAGCATTGCCACATCTAGAAATGGACAGTATGTGGCTTGTGGTTC TAATTGTGGAGTGGTAAACATATACAATCAAGAGTCTTGTCTCCAAGAAACAAACCCAAA GCCGATTAAAGCTATAATGAACTTAGTAACAGGTGTTACTTCTCTGACTTTCAATCCTAC TACAGAAATCTTGGCCATTGCTTCAGATAAAATGAAAGAAGCAGTCAGATTGGTCCACCT TCCTTCCTGTACAGTGTTTTCAAACTTCCCAGTTGCTAAAAAGAAGAATATTTCTCTTGT TCATACCATGGATTTTTCTCCCAGAAGTGGGTACTTTGCCTTGGGGAATGAAAAAGGCAA GGCTCTGATGTATAGGTTGCATCATTACTCAGACTTTTAAAGAGATTATTTGAAATCCAT TTGAGCCCAAAGGAAGCCTGTCCTGATGAATTTTCTCAGAAACTTTCCTGAATGTATGAT AATATATGGACAATGATGTATTGTGCCAACTGTGCTTATTTAGGTTAACAGGATTTTTAA AAAAATTTTTTTGACCACGTCAGCAGCATGCAGAAATTCCCAAGCCAAGGATCAAACCCG TGCCACAGCTCTAACTAGAGCCACAGCAGTGACAGCGTTGGATCCTTAACCCACTGAGCA GTGAGGGATCTCCAACAAATGTTTTAATAAACCCATAACTTCTGTTTGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATCCTAAAATTCAGAGCATCTATTTGGAAAAGTTTCCAATCTTTAAGGCTCGTTTTAG TGCTAATGGAGAAGAGGTTTTAGCCACGAGTACTCACAGCAGGGTGCTTTATGTCTATGA TATGCTGGCTGGAAAGCTAATTCCTGTGCATCAAGTAAGAGGCTTGAAGGAGAAGATAGT GAGGCGCTTCGAAGTCTCCCCAGATGGGTCCTTCCTGCTTATAAATGGTGTTGCTGGATA TTTGCATTTGCTGTCAATGAAGACTAAGGAACTGATTGGCAGTATGAAAATTAATGGAAG GATTGCAGCATCCACGTTCACGTCAGATAGTAAGAAAGTATATGCCTCTTCAGCGGATGG GGAAGTTTATGTTTGGGATGTGAACTCTAGGAAGTGTCTTAACAGATTTGTTGATGAAGG CAGTTTATATGGCTTAAGCATTGCCACATCTAGAAATGGACAGTATGTGGCTTGTGGTTC TAATTGTGGAGTGGTAAACATATACAATCAAGAGTCTTGTCTCCAAGAAACAAACCCAAA GCCGATTAAAGCTATAATGAACTTAGTAACAGGTGTTACTTCTCTGACTTTCAATCCTAC TACAGAAATCTTGGCCATTGCTTCAGATAAAATGAAAGAAGCAGTCAGATTGGTCCACCT TCCTTCCTGTACAGTGTTTTCAAACTTCCCAGTTGCTAAAAAGAAGAATATTTCTCTTGT TCATACCATGGATTTTTCTCCCAGAAGTGGGTACTTTGCCTTGGGGAATGAAAAAGGCAA GGCTCTGATGTATAGGTTGCATCATTACTCAGACTTTTAAAGAGATTATTTGAAATCCAT TTGAGCCCAAAGGAAGCCTGTCCTGATGAATTTTCTCAGAAACTTTCCTGAATGTATGAT AATATATGGACAATGATGTATTGTGCCAACTGTGCTTATTTAGGTTAACAGGATTTTTAA AAAAATTTTTTTGACCACGTCAGCAGCATGCAGAAATTCCCAAGCCAAGGATCAAACCCG TGCCACAGCTCTAACTAGAGCCACAGCAGTGACAGCGTTGGATCCTTAACCCACTGAGCA GTGAGGGATCTCCAACAAATGTTTTAATAAACCCATAACTTCTGTTTGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-162, gnl|bosTau2|chr19 (28564332-28564493) | |
| 1-162, gnl|canFam2|chr9 (30419172-30419377) | |
| 1-162, gnl|canFam2|chr9 (30419189-30419364) | |
| 1-162, gnl|dasNov1|scaffold_175483 (2888-2681) | |
| 1-162, gnl|dasNov1|scaffold_47962 (44891-45071) | |
| 1-162, gnl|echTel1|scaffold_185324 (7322-7119) | |
| 1-162, gnl|echTel1|scaffold_185324 (7307-7132) | |
| 1-162, gnl|fr1|chrUn (306357137-306356953) | |
| 1-162, gnl|fr1|chrUn (306357135-306356956) | |
| 1-162, gnl|galGal2|chr18 (4900264-4900467) | |
| 1-162, gnl|galGal2|chr18 (4900285-4900464) | |
| 1-162, gnl|hg17|chr17 (46709470-46709676) | |
| 1-162, gnl|Hg17|chr17 (46709504-46709665) | |
| 1-162, gnl|hg17|chr18 (41863005-41863183) | |
| 1-162, gnl|loxAfr1|scaffold_18004 (26275-26070) | |
| 1-162, gnl|loxAfr1|scaffold_18004 (26258-26079) | |
| 1-162, gnl|mm7|chr11 (93985017-93984813) | |
| 1-162, gnl|mm7|chr11 (93985001-93984822) | |
| 1-162, gnl|Mm7|chr11 (93984983-93984822) | |
| 1-162, gnl|monDom2|scaffold_124 (2023581-2023383) | |
| 1-162, gnl|monDom2|scaffold_124 (2023565-2023386) | |
| 1-162, gnl|oryCun1|scaffold_124899 (239-444) | |
| 1-162, gnl|oryCun1|scaffold_202963 (42411-42251) | |
| 1-162, gnl|panTro1|chr17 (38193418-38193596) | |
| 1-162, gnl|panTro1|chr19_random (32352579-32352785) | |
| 1-162, gnl|rheMac2|chr16 (35514624-35514830) | |
| 1-162, gnl|rheMac2|chr18 (39066708-39066887) | |
| 1-162, gnl|rn3|chr10 (82547241-82547036) | |
| 1-162, gnl|rn3|chr10 (82547224-82547049) | |
| 1-162, gnl|tetNig1|chrUn_random (46137679-46137495) | |
| 1-162, gnl|tetNig1|chrUn_random (46137677-46137498) | |
| 1-162, gnl|xenTro1|scaffold_92 (1980355-1980550) | |
| 477-951, gnl|bosTau2|chr19 (49591512-49591042) | |
| 477-951, gnl|Hg17|chr18 (41863492-41864290) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-162, gnl|bosTau2|chr19 (28564332-28564493) | |
| 1-162, gnl|canFam2|chr9 (30419172-30419377) | |
| 1-162, gnl|canFam2|chr9 (30419189-30419364) | |
| 1-162, gnl|dasNov1|scaffold_175483 (2888-2681) | |
| 1-162, gnl|dasNov1|scaffold_47962 (44891-45071) | |
| 1-162, gnl|echTel1|scaffold_185324 (7322-7119) | |
| 1-162, gnl|echTel1|scaffold_185324 (7307-7132) | |
| 1-162, gnl|fr1|chrUn (306357137-306356953) | |
| 1-162, gnl|fr1|chrUn (306357135-306356956) | |
| 1-162, gnl|galGal2|chr18 (4900264-4900467) | |
| 1-162, gnl|galGal2|chr18 (4900285-4900464) | |
| 1-162, gnl|hg17|chr17 (46709470-46709676) | |
| 1-162, gnl|Hg17|chr17 (46709504-46709665) | |
| 1-162, gnl|hg17|chr18 (41863005-41863183) | |
| 1-162, gnl|loxAfr1|scaffold_18004 (26275-26070) | |
| 1-162, gnl|loxAfr1|scaffold_18004 (26258-26079) | |
| 1-162, gnl|mm7|chr11 (93985017-93984813) | |
| 1-162, gnl|mm7|chr11 (93985001-93984822) | |
| 1-162, gnl|Mm7|chr11 (93984983-93984822) | |
| 1-162, gnl|monDom2|scaffold_124 (2023581-2023383) | |
| 1-162, gnl|monDom2|scaffold_124 (2023565-2023386) | |
| 1-162, gnl|oryCun1|scaffold_124899 (239-444) | |
| 1-162, gnl|oryCun1|scaffold_202963 (42411-42251) | |
| 1-162, gnl|panTro1|chr17 (38193418-38193596) | |
| 1-162, gnl|panTro1|chr19_random (32352579-32352785) | |
| 1-162, gnl|rheMac2|chr16 (35514624-35514830) | |
| 1-162, gnl|rheMac2|chr18 (39066708-39066887) | |
| 1-162, gnl|rn3|chr10 (82547241-82547036) | |
| 1-162, gnl|rn3|chr10 (82547224-82547049) | |
| 1-162, gnl|tetNig1|chrUn_random (46137679-46137495) | |
| 1-162, gnl|tetNig1|chrUn_random (46137677-46137498) | |
| 1-162, gnl|xenTro1|scaffold_92 (1980355-1980550) | |
| 477-951, gnl|bosTau2|chr19 (49591512-49591042) | |
| 477-951, gnl|Hg17|chr18 (41863492-41864290) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| pan (0.23596) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| gul (0.177588) | |
| rec (0.17307) | |
| fat (0.147427) | |
| liv (0.146284) | |
| pla (0.133672) | |
| ret (0.128733) | |
| sug (0.127291) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (0.23596) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| gul (0.177588) | |
| rec (0.17307) | |
| fat (0.147427) | |
| liv (0.146284) | |
| pla (0.133672) | |
| ret (0.128733) | |
| sug (0.127291) |