Ss1.1-Emb1-C0005215_F22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAGATAGACTATGAAGAAAACATAGACTTGAGTGACGTCCTGGTGCCAAAGCCGTTCT CTCAATTCTGGCAGCCCCTGCTCAGGGGCCTGCACTCCCAGACCTTCACACAGTCCCTGC TGGAGAGGATGCTGTCTGAGCTGCCAGCCTTAGGGGACACCGGGATCCGGCCCACCTACA TCCTCAGATGGACTGTTGAACTGATCGTGGCTAACACCAAGACTGGCCGGAACGCCCGCC GATTTTCTGCAAGCCAGTGGGAAGCAAGAAGGAGCTGGAGGCTATTCAACTGCTCTGCTA CCCTTGACTGGCCCCAGGTGGTCGAGTCCTGCTTGGGCTCACCTTGCTGGGCCAGCCCCC AACTCCTTCAGCTCATCTTCAAAGCCATGGGTCAGGTCCTGCCAGACCAAGAGCAGGAGA AACTGCTGCGCATCTGTTCCATTTATACCCAGAGTGGAGAAAACAACCGGGCACAGGAGG GCTCAGAGGCTTCCCCCATTGGAAAGTCTCCATACACACTAGATAGCCTGTATTGGATCC TCAAACCAGCTGGCTCAAGCTCTGGGCCTGAAGGAGAAGCCCAGCAGCAGGAGAAACAGG GCAGCTTTAATGATGTCAAGGAAGATGAAAGGGAGGAGAAAGAGGTCTTGGAAGACCAGG CGGAAGAGGAGGAAGAAGAAGAAGAAAATAATGAACAGAAGTGGGAGGAGGAGGAAGAAG ATGATGACGATGATGATGATGATGACGATGACGATGACGATGACGATGATGATGATGATG ACGAGGAGGAGGAGGAAGACAGGATGGAGCTGGGGCCTTTCTCTGCAGAGGAAGAGTCTC CCACTGCTGAGCATACAAGACTCCTGGCCCAGAAAAGAGGAGCTTTGCAGGGCTCTGCAT GGCAAGTTAGCTCAGAAGATGTACGGTGGGACACCTTCCCCTTAGGCCGAATGCCAGGAC AGACTGAGGACCCAGCAGAGCTTATGCTGGAGAATTATGACACCATGTATCTTTTGGACC AGCCTGTTCTAGAGCAGCGTTTGGAACCCCCAACATGCAAGACTAGCACCCTGGGCCTGA GCTGTGGTGTTAGCAGTGGCAATGGCAGCAACAGCAGCAGCAACTTGGAAGGCCTTCTCT GGAGCCAGGGCCAACTTCACAGGCTCAAAACTGGCCTGCAGCTCTTCTGATGCCTGCCCT GGTGCAGATGTTCACCCAGTGCTGCTGGGACCGCAGCCTCCCCCTTCTCCCCCCTCCCTT TGGTGCACCTGATGCTCCATGAAACAACCTAGGAAACAGCCTGCAACAGCTGCATCAGCT CAGTTTTCCATCATGGTGGAATTTTGAATATGTTTTGTTTTGAAAAACAATAAATAGGCA ACTGTTGTTTTGGTGTTGGTGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAGATAGACTATGAAGAAAACATAGACTTGAGTGACGTCCTGGTGCCAAAGCCGTTCT CTCAATTCTGGCAGCCCCTGCTCAGGGGCCTGCACTCCCAGACCTTCACACAGTCCCTGC TGGAGAGGATGCTGTCTGAGCTGCCAGCCTTAGGGGACACCGGGATCCGGCCCACCTACA TCCTCAGATGGACTGTTGAACTGATCGTGGCTAACACCAAGACTGGCCGGAACGCCCGCC GATTTTCTGCAAGCCAGTGGGAAGCAAGAAGGAGCTGGAGGCTATTCAACTGCTCTGCTA CCCTTGACTGGCCCCAGGTGGTCGAGTCCTGCTTGGGCTCACCTTGCTGGGCCAGCCCCC AACTCCTTCAGCTCATCTTCAAAGCCATGGGTCAGGTCCTGCCAGACCAAGAGCAGGAGA AACTGCTGCGCATCTGTTCCATTTATACCCAGAGTGGAGAAAACAACCGGGCACAGGAGG GCTCAGAGGCTTCCCCCATTGGAAAGTCTCCATACACACTAGATAGCCTGTATTGGATCC TCAAACCAGCTGGCTCAAGCTCTGGGCCTGAAGGAGAAGCCCAGCAGCAGGAGAAACAGG GCAGCTTTAATGATGTCAAGGAAGATGAAAGGGAGGAGAAAGAGGTCTTGGAAGACCAGG CGGAAGAGGAGGAAGAAGAAGAAGAAAATAATGAACAGAAGTGGGAGGAGGAGGAAGAAG ATGATGACGATGATGATGATGATGACGATGACGATGACGATGACGATGATGATGATGATG ACGAGGAGGAGGAGGAAGACAGGATGGAGCTGGGGCCTTTCTCTGCAGAGGAAGAGTCTC CCACTGCTGAGCATACAAGACTCCTGGCCCAGAAAAGAGGAGCTTTGCAGGGCTCTGCAT GGCAAGTTAGCTCAGAAGATGTACGGTGGGACACCTTCCCCTTAGGCCGAATGCCAGGAC AGACTGAGGACCCAGCAGAGCTTATGCTGGAGAATTATGACACCATGTATCTTTTGGACC AGCCTGTTCTAGAGCAGCGTTTGGAACCCCCAACATGCAAGACTAGCACCCTGGGCCTGA GCTGTGGTGTTAGCAGTGGCAATGGCAGCAACAGCAGCAGCAACTTGGAAGGCCTTCTCT GGAGCCAGGGCCAACTTCACAGGCTCAAAACTGGCCTGCAGCTCTTCTGATGCCTGCCCT GGTGCAGATGTTCACCCAGTGCTGCTGGGACCGCAGCCTCCCCCTTCTCCCCCCTCCCTT TGGTGCACCTGATGCTCCATGAAACAACCTAGGAAACAGCCTGCAACAGCTGCATCAGCT CAGTTTTCCATCATGGTGGAATTTTGAATATGTTTTGTTTTGAAAAACAATAAATAGGCA ACTGTTGTTTTGGTGTTGGTGAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 17-136, + strand, RNAz p=0.735157 | |
| 913-1022, + strand, RNAz p=0.742453 | |
| 945-1062, - strand, RNAz p=0.631417 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 17-136, + strand, RNAz p=0.735157 | |
| 913-1022, + strand, RNAz p=0.742453 | |
| 945-1062, - strand, RNAz p=0.631417 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 17-226, gnl|bosTau2|chrX (31100685-31100476) | |
| 17-226, gnl|canFam2|chrX (53460655-53460859) | |
| 17-226, gnl|echTel1|scaffold_43505 (2779-2576) | |
| 17-226, gnl|hg17|chrX (64526911-64527115) | |
| 17-226, gnl|Hg17|chrX (64527165-64526956) | |
| 17-226, gnl|loxAfr1|scaffold_141917 (5385-5588) | |
| 17-226, gnl|mm7|chrX (91274177-91274380) | |
| 17-226, gnl|Mm7|chrX (91274430-91274221) | |
| 17-226, gnl|oryCun1|scaffold_198193 (6059-6263) | |
| 17-226, gnl|panTro1|chrX (66313467-66313671) | |
| 17-226, gnl|rn3|chrX (83653534-83653737) | |
| 374-771, gnl|bosTau2|chrX (31094652-31094256) | |
| 374-771, gnl|Hg17|chrX (64521366-64520997) | |
| 374-771, gnl|Mm7|chrX (91268303-91267763) | |
| 913-1062, gnl|bosTau2|chrX (31235343-31235194) | |
| 913-1062, gnl|canFam2|chrX (53451803-53452019) | |
| 913-1062, gnl|danRer3|chrNA (22429045-22428872) | |
| 913-1062, gnl|echTel1|scaffold_297377 (64773-64559) | |
| 913-1062, gnl|hg17|chrX (64517692-64517908) | |
| 913-1062, gnl|Hg17|chrX (64517877-64517728) | |
| 913-1062, gnl|mm7|chrX (91264623-91264888) | |
| 913-1062, gnl|Mm7|chrX (91264880-91264731) | |
| 913-1062, gnl|rheMac2|chrX (64077360-64077576) | |
| 913-1062, gnl|rn3|chrX (83643949-83644165) | |
| 1092-1392, gnl|bosTau2|chrX (31233277-31232967) | |
| 1092-1392, gnl|Hg17|chrX (64515789-64515470) | |
| 1092-1392, gnl|Mm7|chrX (91262991-91262671) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 17-226, gnl|bosTau2|chrX (31100685-31100476) | |
| 17-226, gnl|canFam2|chrX (53460655-53460859) | |
| 17-226, gnl|echTel1|scaffold_43505 (2779-2576) | |
| 17-226, gnl|hg17|chrX (64526911-64527115) | |
| 17-226, gnl|Hg17|chrX (64527165-64526956) | |
| 17-226, gnl|loxAfr1|scaffold_141917 (5385-5588) | |
| 17-226, gnl|mm7|chrX (91274177-91274380) | |
| 17-226, gnl|Mm7|chrX (91274430-91274221) | |
| 17-226, gnl|oryCun1|scaffold_198193 (6059-6263) | |
| 17-226, gnl|panTro1|chrX (66313467-66313671) | |
| 17-226, gnl|rn3|chrX (83653534-83653737) | |
| 374-771, gnl|bosTau2|chrX (31094652-31094256) | |
| 374-771, gnl|Hg17|chrX (64521366-64520997) | |
| 374-771, gnl|Mm7|chrX (91268303-91267763) | |
| 913-1062, gnl|bosTau2|chrX (31235343-31235194) | |
| 913-1062, gnl|canFam2|chrX (53451803-53452019) | |
| 913-1062, gnl|danRer3|chrNA (22429045-22428872) | |
| 913-1062, gnl|echTel1|scaffold_297377 (64773-64559) | |
| 913-1062, gnl|hg17|chrX (64517692-64517908) | |
| 913-1062, gnl|Hg17|chrX (64517877-64517728) | |
| 913-1062, gnl|mm7|chrX (91264623-91264888) | |
| 913-1062, gnl|Mm7|chrX (91264880-91264731) | |
| 913-1062, gnl|rheMac2|chrX (64077360-64077576) | |
| 913-1062, gnl|rn3|chrX (83643949-83644165) | |
| 1092-1392, gnl|bosTau2|chrX (31233277-31232967) | |
| 1092-1392, gnl|Hg17|chrX (64515789-64515470) | |
| 1092-1392, gnl|Mm7|chrX (91262991-91262671) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| ecc (0.23007) | |
| ece (0.229305) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| pty (0.142714) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| eep (0.122564) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.23007) | |
| ece (0.229305) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| pty (0.142714) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| eep (0.122564) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |