Ss1.1-Emb1-C0005215_H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCGCTGCCACTGCTGCCGCTACCGCCTCCGCGGGGGTGGGCTTTGCGAGTCCGAGCGT TAGCCCGGCCCAGAACTGTTAGGTGCCGGGAGTCGCAAACGTTGAGCAGGAGTTCGTTGA GGATCCCGGGGAGGAGGAACCGCGGGCGCAGCCGCCCGGCCGACATGTCTCTAGTGGCGG AAGCCTTCGTCTCTCAGATCGCAGCTGCAGAACCTTGGCCTGAAAATGCTACATTATATC AGCAGCTGAAAGGGGAGCAAATTTTGCTTTCTGATAATGCAGCTTCTCTTGCTGTGCAGG CCTTTTTACAGATGTGTAATCTGCCTATCAAGGTGGTTTGCAGGGCAAATGCAGAATACA TGTCTCCATCTGGTAAAGTACCTTTTATTCACGTAGGAAATCAAGTAGTATCAGAACTTG GTCCAATAGTCCAATTCGTTAAAGCCAAGGGCCATTCTCTTAGTGATGGGCTGGATGAAG TCCAAAAAGCAGAAATGAAAGCCTACATGGAATTAGTCAACAATATGCTACTGACTGCAG AGTTGTATCTTCAGTGGTGTGATGAAGCTACAGTAGGGGAGATCACTCATGCTCGGTATG GATCTCCTTACCCTTGGCCTCTGAATCATATTTTGGCCTATCAGAAACAGTGGGAAGTCA AACGTAAGATGAAAGCTATTGGATGGGGTAACAAGACTCTGGACCAGGTCTTAGAAGATG TAGACCAGTGCTGTCAAGCTCTTTCTCAAAGACTGGGAACACAACCATATTTCTTCAATA AGCAGCCTACTGAACTAGATGCATTGGTATTTGGCCATCTGTACACCATTCTTACCACAC AATTGACCAACGATGAACTTTCTGAGAAGGTGAAAAACTATAGCAACCTCCTTGCTTTCT GTAGAAGAATTGAACAACACTATTTTGAAGATCATAGTAAAGGCAGCTCATCCGTTAGAT TGTCGTAGAGTTATATGTTAGTTTAGTTATTATTTTAAAAAGTTTAACTTTTGAAATATA TGTTACTTGAATGATATAATAGATAATGGTATCAGAATTTTAAAACCAAAAATACTGCTG TTCAAAACCTCAAAACAAATTATATAATGTATCATATACATGTACTTTATATTGTTATTT GTGTACACATTAAAATAATTTTGAATGATTTCATTTGATATGTTGTACCCTATATCTTGA AATTTTTGTTTTCTTGACACGTATATGCATATAAAAATAAAGTTAAATAACTGTAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCGCTGCCACTGCTGCCGCTACCGCCTCCGCGGGGGTGGGCTTTGCGAGTCCGAGCGT TAGCCCGGCCCAGAACTGTTAGGTGCCGGGAGTCGCAAACGTTGAGCAGGAGTTCGTTGA GGATCCCGGGGAGGAGGAACCGCGGGCGCAGCCGCCCGGCCGACATGTCTCTAGTGGCGG AAGCCTTCGTCTCTCAGATCGCAGCTGCAGAACCTTGGCCTGAAAATGCTACATTATATC AGCAGCTGAAAGGGGAGCAAATTTTGCTTTCTGATAATGCAGCTTCTCTTGCTGTGCAGG CCTTTTTACAGATGTGTAATCTGCCTATCAAGGTGGTTTGCAGGGCAAATGCAGAATACA TGTCTCCATCTGGTAAAGTACCTTTTATTCACGTAGGAAATCAAGTAGTATCAGAACTTG GTCCAATAGTCCAATTCGTTAAAGCCAAGGGCCATTCTCTTAGTGATGGGCTGGATGAAG TCCAAAAAGCAGAAATGAAAGCCTACATGGAATTAGTCAACAATATGCTACTGACTGCAG AGTTGTATCTTCAGTGGTGTGATGAAGCTACAGTAGGGGAGATCACTCATGCTCGGTATG GATCTCCTTACCCTTGGCCTCTGAATCATATTTTGGCCTATCAGAAACAGTGGGAAGTCA AACGTAAGATGAAAGCTATTGGATGGGGTAACAAGACTCTGGACCAGGTCTTAGAAGATG TAGACCAGTGCTGTCAAGCTCTTTCTCAAAGACTGGGAACACAACCATATTTCTTCAATA AGCAGCCTACTGAACTAGATGCATTGGTATTTGGCCATCTGTACACCATTCTTACCACAC AATTGACCAACGATGAACTTTCTGAGAAGGTGAAAAACTATAGCAACCTCCTTGCTTTCT GTAGAAGAATTGAACAACACTATTTTGAAGATCATAGTAAAGGCAGCTCATCCGTTAGAT TGTCGTAGAGTTATATGTTAGTTTAGTTATTATTTTAAAAAGTTTAACTTTTGAAATATA TGTTACTTGAATGATATAATAGATAATGGTATCAGAATTTTAAAACCAAAAATACTGCTG TTCAAAACCTCAAAACAAATTATATAATGTATCATATACATGTACTTTATATTGTTATTT GTGTACACATTAAAATAATTTTGAATGATTTCATTTGATATGTTGTACCCTATATCTTGA AATTTTTGTTTTCTTGACACGTATATGCATATAAAAATAAAGTTAAATAACTGTAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 284-389, + strand, RNAz p=0.689785 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 284-389, + strand, RNAz p=0.689785 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 13-204, gnl|bosTau2|chr2 (10484018-10483825) | |
| 13-204, gnl|canFam2|chr36 (23094491-23094973) | |
| 13-204, gnl|hg17|chr2 (176959535-176960126) | |
| 13-204, gnl|Hg17|chr2 (176959713-176959904) | |
| 13-204, gnl|loxAfr1|scaffold_24285 (48173-47539) | |
| 13-204, gnl|mm7|chr2 (74669476-74669979) | |
| 13-204, gnl|Mm7|chr2 (74669580-74669759) | |
| 13-204, gnl|oryCun1|scaffold_203208 (40855-40286) | |
| 13-204, gnl|panTro1|chr13 (66614040-66614635) | |
| 13-204, gnl|rheMac2|chr12 (39914046-39914632) | |
| 13-204, gnl|rn3|chr3 (57357192-57357680) | |
| 284-389, gnl|bosTau2|chr2 (10425347-10425243) | |
| 284-389, gnl|Hg17|chr2 (177013611-177013715) | |
| 284-389, gnl|Mm7|chr2 (74703105-74703209) | |
| 580-710, gnl|bosTau2|chr2 (10419655-10419525) | |
| 580-710, gnl|canFam2|chr36 (23149385-23149510) | |
| 580-710, gnl|danRer3|chr6 (6206573-6206698) | |
| 580-710, gnl|echTel1|scaffold_316333 (40888-40763) | |
| 580-710, gnl|fr1|chrUn (297485659-297485534) | |
| 580-710, gnl|Hg17|chr2 (177019534-177019664) | |
| 580-710, gnl|hg17|chr7 (124579013-124579138) | |
| 580-710, gnl|mm7|chr2 (74713019-74713144) | |
| 580-710, gnl|Mm7|chr2 (74713018-74713148) | |
| 580-710, gnl|panTro1|chr6 (126972189-126972314) | |
| 580-710, gnl|rheMac2|chr3 (162885609-162885734) | |
| 580-710, gnl|rn3|chr3 (57413492-57413617) | |
| 580-710, gnl|xenTro1|scaffold_353 (756829-756954) | |
| 785-1255, gnl|bosTau2|chr2 (10410367-10409906) | |
| 785-1255, gnl|Hg17|chr2 (177027728-177028170) | |
| 785-1255, gnl|Mm7|chr2 (74720019-74720456) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-204, gnl|bosTau2|chr2 (10484018-10483825) | |
| 13-204, gnl|canFam2|chr36 (23094491-23094973) | |
| 13-204, gnl|hg17|chr2 (176959535-176960126) | |
| 13-204, gnl|Hg17|chr2 (176959713-176959904) | |
| 13-204, gnl|loxAfr1|scaffold_24285 (48173-47539) | |
| 13-204, gnl|mm7|chr2 (74669476-74669979) | |
| 13-204, gnl|Mm7|chr2 (74669580-74669759) | |
| 13-204, gnl|oryCun1|scaffold_203208 (40855-40286) | |
| 13-204, gnl|panTro1|chr13 (66614040-66614635) | |
| 13-204, gnl|rheMac2|chr12 (39914046-39914632) | |
| 13-204, gnl|rn3|chr3 (57357192-57357680) | |
| 284-389, gnl|bosTau2|chr2 (10425347-10425243) | |
| 284-389, gnl|Hg17|chr2 (177013611-177013715) | |
| 284-389, gnl|Mm7|chr2 (74703105-74703209) | |
| 580-710, gnl|bosTau2|chr2 (10419655-10419525) | |
| 580-710, gnl|canFam2|chr36 (23149385-23149510) | |
| 580-710, gnl|danRer3|chr6 (6206573-6206698) | |
| 580-710, gnl|echTel1|scaffold_316333 (40888-40763) | |
| 580-710, gnl|fr1|chrUn (297485659-297485534) | |
| 580-710, gnl|Hg17|chr2 (177019534-177019664) | |
| 580-710, gnl|hg17|chr7 (124579013-124579138) | |
| 580-710, gnl|mm7|chr2 (74713019-74713144) | |
| 580-710, gnl|Mm7|chr2 (74713018-74713148) | |
| 580-710, gnl|panTro1|chr6 (126972189-126972314) | |
| 580-710, gnl|rheMac2|chr3 (162885609-162885734) | |
| 580-710, gnl|rn3|chr3 (57413492-57413617) | |
| 580-710, gnl|xenTro1|scaffold_353 (756829-756954) | |
| 785-1255, gnl|bosTau2|chr2 (10410367-10409906) | |
| 785-1255, gnl|Hg17|chr2 (177027728-177028170) | |
| 785-1255, gnl|Mm7|chr2 (74720019-74720456) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| kid (0.648677) | |
| gul (0.532765) | |
| bfe (0.449573) | |
| sug (0.381874) | |
| duo (0.345602) | |
| fat (0.294855) | |
| ski (0.29347) | |
| spl (0.286369) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sag (0.182715) | |
| sin (0.174948) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ret (0.128733) | |
| ese (0.126502) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.648677) | |
| gul (0.532765) | |
| bfe (0.449573) | |
| sug (0.381874) | |
| duo (0.345602) | |
| fat (0.294855) | |
| ski (0.29347) | |
| spl (0.286369) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sag (0.182715) | |
| sin (0.174948) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ret (0.128733) | |
| ese (0.126502) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |