Non-Coding RNA Search

Ss1.1-Emb1-C0005216_B14.5

Sequence:


               
               GTTGGTCCTGTGGTTATCCTCTGTGAGTGACGTGTTTGTTAGACAGTTTTTGAAACTTTG
TTTCATTGGTATGACTAAGGAATGAGCAAATGTAATCCTACTGGACTTCAAAGACTGAAA
CTCAGGCTTTGGTAGACCTGTGGGCATCAGAGTGATGGGAGAGAGCCCATTCATGAACTG
GAGACTGCTGAAGAAGATGAGCCTTTCGTGCCCAGTCTTTCGTGTGTGTGGAAGAACGGT
TGTCAGGGAGATGTATTACTGACTTGTACATGAGGACAGCTTGTTTACTTATTCGCCCTC
TTAAATGTCAGAACGTGCTTAGAAAAACCACTGAGAAATTTCCAGCTTCCCACTGTTGGG
AAACAGAACTTGGATGTTTCTTCTGTATCACTCAGGTACTAAATCACTCATCCACAACAA
CAGGTAGTTACTGAACCTCTTGTTTTGCAGCCAAACAAGTACATGCAACCAGTCCACATA
TAGTTGTGGAAGAGTGCTGATGACACATTAGCAGAGCCAGGCAGGCTTTCATTTCTGAAT
GTTAGGAGCTCGAAGTAGAAGACATTTATTGCTCCATGTATCCCACACTCTTGCATGCTC
AGAAGGCCAGTTACCTTGACCACGGTTCTTATGCCTCAAGGACCACATGTCTGTGTCAGA
GGTAGCAATCACTGCAGCTCTCTTTGGTTGTGGGCTGGCTGGAGGAATTAAGAGCAGAGA
TTCTTGAGTTCTTAAATTCTGTTCTGTGTTCATGTCATGTGGTCTCTCTCAGGCTTTGTG
ATACTCCCTTGCCCTTTGGGATTTCTTGGATTCCCCCTCTTCCTTTCCTTTCTCATTTGA
CTTTATTATCAGTCTTTGCTTGTGAATCTGTTTCCATTCAACAAGGTAATAGAAATCTCC
CATCACTGTTAGTTAGATTATTTTTTCACACCATTTTAAAAACCTTTTATTGGCTTTAGA
ATCAGTTTTTAAACCTCGCCACAAAAAGCTCTAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGGTCCTGTGGTTATCCTCTGTGAGTGACGTGTTTGTTAGACAGTTTTTGAAACTTTG
TTTCATTGGTATGACTAAGGAATGAGCAAATGTAATCCTACTGGACTTCAAAGACTGAAA
CTCAGGCTTTGGTAGACCTGTGGGCATCAGAGTGATGGGAGAGAGCCCATTCATGAACTG
GAGACTGCTGAAGAAGATGAGCCTTTCGTGCCCAGTCTTTCGTGTGTGTGGAAGAACGGT
TGTCAGGGAGATGTATTACTGACTTGTACATGAGGACAGCTTGTTTACTTATTCGCCCTC
TTAAATGTCAGAACGTGCTTAGAAAAACCACTGAGAAATTTCCAGCTTCCCACTGTTGGG
AAACAGAACTTGGATGTTTCTTCTGTATCACTCAGGTACTAAATCACTCATCCACAACAA
CAGGTAGTTACTGAACCTCTTGTTTTGCAGCCAAACAAGTACATGCAACCAGTCCACATA
TAGTTGTGGAAGAGTGCTGATGACACATTAGCAGAGCCAGGCAGGCTTTCATTTCTGAAT
GTTAGGAGCTCGAAGTAGAAGACATTTATTGCTCCATGTATCCCACACTCTTGCATGCTC
AGAAGGCCAGTTACCTTGACCACGGTTCTTATGCCTCAAGGACCACATGTCTGTGTCAGA
GGTAGCAATCACTGCAGCTCTCTTTGGTTGTGGGCTGGCTGGAGGAATTAAGAGCAGAGA
TTCTTGAGTTCTTAAATTCTGTTCTGTGTTCATGTCATGTGGTCTCTCTCAGGCTTTGTG
ATACTCCCTTGCCCTTTGGGATTTCTTGGATTCCCCCTCTTCCTTTCCTTTCTCATTTGA
CTTTATTATCAGTCTTTGCTTGTGAATCTGTTTCCATTCAACAAGGTAATAGAAATCTCC
CATCACTGTTAGTTAGATTATTTTTTCACACCATTTTAAAAACCTTTTATTGGCTTTAGA
ATCAGTTTTTAAACCTCGCCACAAAAAGCTCTAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               790-900, - strand, RNAz p=0.61945

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               790-900, - strand, RNAz p=0.61945

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               377-996, gnl|bosTau2|chr13 (51350080-51350702)
               

               
               377-996, gnl|Hg17|chr20 (39173403-39174098)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               377-996, gnl|bosTau2|chr13 (51350080-51350702)
               

               
               377-996, gnl|Hg17|chr20 (39173403-39174098)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	377-996, gnl\|bosTau2\|chr13 (51350080-51350702)
	377-996, gnl\|Hg17\|chr20 (39173403-39174098)