Non-Coding RNA Search

Ss1.1-Emb1-C0005216_D07.5

Sequence:


               
               TAAACTGCACAGTGTTTTTTAAACTTACGTTTTAAAATAAATGCCGAAAATAAGTAGATC
TTTATATAAATATATATTTATAATGTTTCCATACTCAGCTACAATTTCCCCTGTGGTTGG
AGGGGAGAAAGCAAAGCTATTGGAGGGAGTATAAAGCTTTAAAAGCTGAATTTTCCAGAT
ATTTTTAGGTGAGTTGATAGAGGTTTTTTTTTTTTTTTTTAAATTAGAATAGCATTTTGA
AGTTTGAATCTGGGAATATACTATTCTTGTAGTTTCTTTGTTCTTTTTTTTTTTTTCAGG
TTAATTATCCAAAGCCTCATCCATCCTCAAAATTTTCAAACTTTATTTTTTTTTTGTAAA
TGAATGGGCATTGTGTTTATGGATTTTAAAAATACAATTGTTTTATTTAAATGCCATGCT
GAGCAGTTGTTCTCTGTTCATGGTAACCAAAACCTGAAGCGATTTCGATCAGTTTTGATC
ACTATTTAGTTATCCAAAACATGTACTGTGTACAAATGAAATAATATGGCATATTAGCCA
GGTTTCATGGTTGCCCAAGGCATTTAATGGAAGCTCAGTTTTGTATTTTATTAAGGCTCC
AGCATATGCTTGATCTGAAATGTGTACATTTTTGGTGTATACTTGGTACTAGAGATTCCT
GTATGCAAATATCCTCATATATAAGAAGGCTCAACATTGTTCGTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAACTGCACAGTGTTTTTTAAACTTACGTTTTAAAATAAATGCCGAAAATAAGTAGATC
TTTATATAAATATATATTTATAATGTTTCCATACTCAGCTACAATTTCCCCTGTGGTTGG
AGGGGAGAAAGCAAAGCTATTGGAGGGAGTATAAAGCTTTAAAAGCTGAATTTTCCAGAT
ATTTTTAGGTGAGTTGATAGAGGTTTTTTTTTTTTTTTTTAAATTAGAATAGCATTTTGA
AGTTTGAATCTGGGAATATACTATTCTTGTAGTTTCTTTGTTCTTTTTTTTTTTTTCAGG
TTAATTATCCAAAGCCTCATCCATCCTCAAAATTTTCAAACTTTATTTTTTTTTTGTAAA
TGAATGGGCATTGTGTTTATGGATTTTAAAAATACAATTGTTTTATTTAAATGCCATGCT
GAGCAGTTGTTCTCTGTTCATGGTAACCAAAACCTGAAGCGATTTCGATCAGTTTTGATC
ACTATTTAGTTATCCAAAACATGTACTGTGTACAAATGAAATAATATGGCATATTAGCCA
GGTTTCATGGTTGCCCAAGGCATTTAATGGAAGCTCAGTTTTGTATTTTATTAAGGCTCC
AGCATATGCTTGATCTGAAATGTGTACATTTTTGGTGTATACTTGGTACTAGAGATTCCT
GTATGCAAATATCCTCATATATAAGAAGGCTCAACATTGTTCGTGCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               409-568, - strand, RNAz p=0.723335

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               409-568, - strand, RNAz p=0.723335

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               15-707, gnl|bosTau2|chr25 (11398071-11398750)
               

               
               15-707, gnl|Hg17|chr16 (19036837-19037829)
               

               
               15-707, gnl|Mm7|chr7 (114410504-114409740)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-707, gnl|bosTau2|chr25 (11398071-11398750)
               

               
               15-707, gnl|Hg17|chr16 (19036837-19037829)
               

               
               15-707, gnl|Mm7|chr7 (114410504-114409740)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               rec (0.17307)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               cbl (0.114797)

	15-707, gnl\|bosTau2\|chr25 (11398071-11398750)
	15-707, gnl\|Hg17\|chr16 (19036837-19037829)
	15-707, gnl\|Mm7\|chr7 (114410504-114409740)