Ss1.1-Emb1-C0005216_J15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGGTTTTAAATGCTAAAGATGCTGGAGAAATTATTGACCGAGAAGAAATTTTCAGTTG TTTCCGGAATGAATCACTGGAAGGCAATGAGGCAGTCCAGGCGAAGAAGAAAAACCACAA TCCTTCTGGAGATACAGGTGGCACAAAGGATCAAGATAGTGTGGTTGCACAAAATGTTCC TTTAAAGTCTCAAATCAGCAGATACATGTGCAAGACACCAGCAGAGTCTAACTTGGATTC TGGAGAGCCTGAAACTTCAGTTTTGGAAGAAAGTGGACCGTCTAGGCTCAAGAACTGTTT AACATCTGGAAAGAATAATTCAGATGTGGATGATAATGAAGTTCAGCAAAGTTCAGATGA TCCAAGAGTAGAAAGATGTAACTCAACGCCAGAGAACAAAATGCATCACAAATTAGTATT GCCCTCCAACACACCAAATGTTCGCAGGACCACGAGAACACGATCGAAACCTTTGGAATA CTGGCGAGGGGAGCGAATAAATTATCAAGGAAGACCATCAGGAGGATTTGTGGTTGGTGG AATACTGTCCCCAGACACAGTATCGTGTAAAAGGAAAACAAAAGGAAACTTGGGAAAAGT CAACACAGCAGTGAATAGGAAAAGGATCTGCCTTGATAATGATGAAAGAAAGAATAAATT GATGGTAAATCTGAATGTACCTCTCGGAGATCCTTTGCAGCCAACAAGGGTAAAAGACCC AGAAACAAGAGAGATTATTCTTATGGATCTTGTAAGGCCACGAGATACATATCAATTTTG TGTTGAACATGGTGAATTGAAAGTATATAAAACATTGGATACACCCTTTTTTTCTACTGG AAAATTGATATTGGGACCACTTCAAGAAAAAGGAAAGCAGCATGTTGGTTTGGATACCCT GGTTTTTTATGTTAACTTCGGTGACCTTTTATGTACCTTACATGAAACACCTTATATAAT AACAACTGGGGATACGTTTTATGTACCTTCAGGTAATTATTATAACATCAAAAATCTCCT GAATGAGGAAAGTATTCTTCTTTTTACTCAGATAAAAAGTTGAAAGATGAAGCAAAGTTT AAGTACATGTATATATATATATAAACATACATATGTACATAATACATATAAAACACATTG CAGTCGAGTTGTTTATATTTGTAATTATTTGTAATGTTTTAAAATATTCAGTTTTGTGTA CTTGTTTCAATAAACATTTCAAAATCCCAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGGTTTTAAATGCTAAAGATGCTGGAGAAATTATTGACCGAGAAGAAATTTTCAGTTG TTTCCGGAATGAATCACTGGAAGGCAATGAGGCAGTCCAGGCGAAGAAGAAAAACCACAA TCCTTCTGGAGATACAGGTGGCACAAAGGATCAAGATAGTGTGGTTGCACAAAATGTTCC TTTAAAGTCTCAAATCAGCAGATACATGTGCAAGACACCAGCAGAGTCTAACTTGGATTC TGGAGAGCCTGAAACTTCAGTTTTGGAAGAAAGTGGACCGTCTAGGCTCAAGAACTGTTT AACATCTGGAAAGAATAATTCAGATGTGGATGATAATGAAGTTCAGCAAAGTTCAGATGA TCCAAGAGTAGAAAGATGTAACTCAACGCCAGAGAACAAAATGCATCACAAATTAGTATT GCCCTCCAACACACCAAATGTTCGCAGGACCACGAGAACACGATCGAAACCTTTGGAATA CTGGCGAGGGGAGCGAATAAATTATCAAGGAAGACCATCAGGAGGATTTGTGGTTGGTGG AATACTGTCCCCAGACACAGTATCGTGTAAAAGGAAAACAAAAGGAAACTTGGGAAAAGT CAACACAGCAGTGAATAGGAAAAGGATCTGCCTTGATAATGATGAAAGAAAGAATAAATT GATGGTAAATCTGAATGTACCTCTCGGAGATCCTTTGCAGCCAACAAGGGTAAAAGACCC AGAAACAAGAGAGATTATTCTTATGGATCTTGTAAGGCCACGAGATACATATCAATTTTG TGTTGAACATGGTGAATTGAAAGTATATAAAACATTGGATACACCCTTTTTTTCTACTGG AAAATTGATATTGGGACCACTTCAAGAAAAAGGAAAGCAGCATGTTGGTTTGGATACCCT GGTTTTTTATGTTAACTTCGGTGACCTTTTATGTACCTTACATGAAACACCTTATATAAT AACAACTGGGGATACGTTTTATGTACCTTCAGGTAATTATTATAACATCAAAAATCTCCT GAATGAGGAAAGTATTCTTCTTTTTACTCAGATAAAAAGTTGAAAGATGAAGCAAAGTTT AAGTACATGTATATATATATATAAACATACATATGTACATAATACATATAAAACACATTG CAGTCGAGTTGTTTATATTTGTAATTATTTGTAATGTTTTAAAATATTCAGTTTTGTGTA CTTGTTTCAATAAACATTTCAAAATCCCAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 131-273, gnl|bosTau2|chr6 (43669199-43669341) | |
| 131-273, gnl|canFam2|chr13 (60982830-60983009) | |
| 131-273, gnl|dasNov1|scaffold_66880 (1566-1747) | |
| 131-273, gnl|echTel1|scaffold_238015 (561-719) | |
| 131-273, gnl|hg17|chr4 (68201265-68201447) | |
| 131-273, gnl|Hg17|chr4 (68201417-68201272) | |
| 131-273, gnl|loxAfr1|scaffold_37480 (1323-1502) | |
| 131-273, gnl|mm7|chr5 (85970682-85970856) | |
| 131-273, gnl|Mm7|chr5 (85970834-85970689) | |
| 131-273, gnl|oryCun1|scaffold_176494 (13998-14180) | |
| 131-273, gnl|panTro1|chr3 (78287618-78287436) | |
| 131-273, gnl|rheMac2|chr5 (61850421-61850239) | |
| 131-273, gnl|rn3|chr14 (23807254-23807079) | |
| 518-650, gnl|bosTau2|chr6 (43685938-43686070) | |
| 518-650, gnl|canFam2|chr13 (60963555-60963418) | |
| 518-650, gnl|canFam2|chr13 (60963402-60963609) | |
| 518-650, gnl|dasNov1|scaffold_48804 (5631-5501) | |
| 518-650, gnl|dasNov1|scaffold_48804 (5478-5691) | |
| 518-650, gnl|echTel1|scaffold_117222 (1046-912) | |
| 518-650, gnl|echTel1|scaffold_117222 (889-1087) | |
| 518-650, gnl|hg17|chr12 (88398644-88398786) | |
| 518-650, gnl|hg17|chr4 (68187331-68187532) | |
| 518-650, gnl|Hg17|chr4 (68187485-68187353) | |
| 518-650, gnl|loxAfr1|scaffold_8783 (81001-80868) | |
| 518-650, gnl|loxAfr1|scaffold_8783 (80845-81050) | |
| 518-650, gnl|mm7|chr2 (44797758-44797889) | |
| 518-650, gnl|mm7|chr5 (85957932-85958131) | |
| 518-650, gnl|Mm7|chr5 (85958079-85957950) | |
| 518-650, gnl|oryCun1|scaffold_120886 (11949-11810) | |
| 518-650, gnl|oryCun1|scaffold_176494 (2007-2211) | |
| 518-650, gnl|panTro1|chr10 (90524965-90525107) | |
| 518-650, gnl|panTro1|chr3 (78301567-78301366) | |
| 518-650, gnl|rheMac2|chr5 (61864243-61864371) | |
| 518-650, gnl|rheMac2|chr5 (61864394-61864193) | |
| 518-650, gnl|rn3|chr14 (23823077-23823192) | |
| 518-650, gnl|rn3|chr14 (23823221-23823022) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 131-273, gnl|bosTau2|chr6 (43669199-43669341) | |
| 131-273, gnl|canFam2|chr13 (60982830-60983009) | |
| 131-273, gnl|dasNov1|scaffold_66880 (1566-1747) | |
| 131-273, gnl|echTel1|scaffold_238015 (561-719) | |
| 131-273, gnl|hg17|chr4 (68201265-68201447) | |
| 131-273, gnl|Hg17|chr4 (68201417-68201272) | |
| 131-273, gnl|loxAfr1|scaffold_37480 (1323-1502) | |
| 131-273, gnl|mm7|chr5 (85970682-85970856) | |
| 131-273, gnl|Mm7|chr5 (85970834-85970689) | |
| 131-273, gnl|oryCun1|scaffold_176494 (13998-14180) | |
| 131-273, gnl|panTro1|chr3 (78287618-78287436) | |
| 131-273, gnl|rheMac2|chr5 (61850421-61850239) | |
| 131-273, gnl|rn3|chr14 (23807254-23807079) | |
| 518-650, gnl|bosTau2|chr6 (43685938-43686070) | |
| 518-650, gnl|canFam2|chr13 (60963555-60963418) | |
| 518-650, gnl|canFam2|chr13 (60963402-60963609) | |
| 518-650, gnl|dasNov1|scaffold_48804 (5631-5501) | |
| 518-650, gnl|dasNov1|scaffold_48804 (5478-5691) | |
| 518-650, gnl|echTel1|scaffold_117222 (1046-912) | |
| 518-650, gnl|echTel1|scaffold_117222 (889-1087) | |
| 518-650, gnl|hg17|chr12 (88398644-88398786) | |
| 518-650, gnl|hg17|chr4 (68187331-68187532) | |
| 518-650, gnl|Hg17|chr4 (68187485-68187353) | |
| 518-650, gnl|loxAfr1|scaffold_8783 (81001-80868) | |
| 518-650, gnl|loxAfr1|scaffold_8783 (80845-81050) | |
| 518-650, gnl|mm7|chr2 (44797758-44797889) | |
| 518-650, gnl|mm7|chr5 (85957932-85958131) | |
| 518-650, gnl|Mm7|chr5 (85958079-85957950) | |
| 518-650, gnl|oryCun1|scaffold_120886 (11949-11810) | |
| 518-650, gnl|oryCun1|scaffold_176494 (2007-2211) | |
| 518-650, gnl|panTro1|chr10 (90524965-90525107) | |
| 518-650, gnl|panTro1|chr3 (78301567-78301366) | |
| 518-650, gnl|rheMac2|chr5 (61864243-61864371) | |
| 518-650, gnl|rheMac2|chr5 (61864394-61864193) | |
| 518-650, gnl|rn3|chr14 (23823077-23823192) | |
| 518-650, gnl|rn3|chr14 (23823221-23823022) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ret (0.257467) | |
| thg (0.253582) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| sug (0.127291) | |
| tra (0.123092) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.257467) | |
| thg (0.253582) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| sug (0.127291) | |
| tra (0.123092) |