Ss1.1-Emb1-C0005216_M12.5
|
AATTGCTCCAGTGCAAGGAACTGCATTTGATCTGAGGAAGCCAGTGGAGCTTGGAAAACA
CCTGCAGGAGTTCCACATCAATGGCTTTGACCACAATTTCTGTCTGAAGAGATCTAAAGA
AAAGCAATTTTGTGCACGGGTCCATCATGCTGGAAGCGGGAGGGTCCTGGAAGTGTACAC
TACCCAGCCTGGGATCCAGTTTTACACGGGCAACTTCCTGGATGGCACGCTGAAGGGCAA
AACTGGAGCAGTCTATCCCAAGCACTCTGGTTTCTGCCTTGAGACCCAGAACTGGCCTAA
TGCAGTCAATCAGCCCCACTTCCCTCCTGTGCTGCTGAAGCCTGGTGAGGAGTACAACCA
CACCACTTGGTTTGTGTTTTCTGTGGCTTAAGGAAGTGTTAAGTTATGACCTGTTTCAGG
GCCAGGCTGGGAGCCCCTTCAGGAACCTGTCTCCTGTGCAGAGATAAGATGAAGATTTAG
AAGCTTTAAAAGTGATCCTGTGAATTAAAATCACACATATGGTAGTTGTCATGATAATCT
GAATTTCAATTTCTTTCCCAATGACTGACTCCAGGCCAGGTCTAATGGTCAGCTCTATTC
TCTGTGTGGTGAAGACCCAACCAGCAATATCATCATCTAAGCCCTGACCCTAATCCAGAA
GTGGTATCCAGATCCTTGTGTTGGCTCTATCTCTCCACTCTGCTTCTTTTCACCCCTTTT
TTCTTTGATTCTACTCATTCCTTCTTTTCCCTCCTCTTCTACCTCATACCACCTTGATCT
GTGCAGCACTTTGGAGTTTTCAGAGGTTACTTAGCTCATTCAGCCTGCTGATAAGAGGAA
CCTCTCTGCCTCAATAAAAGAATGATGGAGAAGTGAGCCACCTGAGGCTTAGAGGTAAAT
GACCCACCTAAGGTCGCACAGCCAAGAAAAATTTAGCCTGGATTCAAGATCAGTCATGCA
AATTCAAGTCCTTCTTTGCTTCCACTTCAGTCTTCCAGAGCATTCCCGGGGTCACTAATG
GGAAAAGAGGGGGTCTGACCCTTACTCTGTTAGAGCTAGCCTTTCTTTCCAGCTATCACT
TTTATAAGAAGCCCTAGTCAGAGTTTAAATGTAACTATCTTTGAGCCTTATAGTATGACT
TAAAATACAAGATCTAAATATCCAGAAAAAAAAATCTGTAAATTTGATTCTCTGCCTTTG
GAGTTCACTAAGAAAACCCAGCCCAGCCAAGACATGCGAAGGAAGCCGCTGGAGACAAGA
ACTGTGTTAGTGTGTGGAGAGGGCATTGCTGGGGATTGCACATTGCACGGAGACCAGATG
TTGTATTAGGGAGTACGAGGCTGGAGTTCCCTCTTTTCCTAAACAATTGAATCATTGGTG
ATGGGTTTGTGTTGATGGTTTTTAAAGAAATGTATCTTATACTACTATATGCTAATAATC
AACTGAAATAAAACCAAAATCTGCACCCAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AATTGCTCCAGTGCAAGGAACTGCATTTGATCTGAGGAAGCCAGTGGAGCTTGGAAAACA
CCTGCAGGAGTTCCACATCAATGGCTTTGACCACAATTTCTGTCTGAAGAGATCTAAAGA
AAAGCAATTTTGTGCACGGGTCCATCATGCTGGAAGCGGGAGGGTCCTGGAAGTGTACAC
TACCCAGCCTGGGATCCAGTTTTACACGGGCAACTTCCTGGATGGCACGCTGAAGGGCAA
AACTGGAGCAGTCTATCCCAAGCACTCTGGTTTCTGCCTTGAGACCCAGAACTGGCCTAA
TGCAGTCAATCAGCCCCACTTCCCTCCTGTGCTGCTGAAGCCTGGTGAGGAGTACAACCA
CACCACTTGGTTTGTGTTTTCTGTGGCTTAAGGAAGTGTTAAGTTATGACCTGTTTCAGG
GCCAGGCTGGGAGCCCCTTCAGGAACCTGTCTCCTGTGCAGAGATAAGATGAAGATTTAG
AAGCTTTAAAAGTGATCCTGTGAATTAAAATCACACATATGGTAGTTGTCATGATAATCT
GAATTTCAATTTCTTTCCCAATGACTGACTCCAGGCCAGGTCTAATGGTCAGCTCTATTC
TCTGTGTGGTGAAGACCCAACCAGCAATATCATCATCTAAGCCCTGACCCTAATCCAGAA
GTGGTATCCAGATCCTTGTGTTGGCTCTATCTCTCCACTCTGCTTCTTTTCACCCCTTTT
TTCTTTGATTCTACTCATTCCTTCTTTTCCCTCCTCTTCTACCTCATACCACCTTGATCT
GTGCAGCACTTTGGAGTTTTCAGAGGTTACTTAGCTCATTCAGCCTGCTGATAAGAGGAA
CCTCTCTGCCTCAATAAAAGAATGATGGAGAAGTGAGCCACCTGAGGCTTAGAGGTAAAT
GACCCACCTAAGGTCGCACAGCCAAGAAAAATTTAGCCTGGATTCAAGATCAGTCATGCA
AATTCAAGTCCTTCTTTGCTTCCACTTCAGTCTTCCAGAGCATTCCCGGGGTCACTAATG
GGAAAAGAGGGGGTCTGACCCTTACTCTGTTAGAGCTAGCCTTTCTTTCCAGCTATCACT
TTTATAAGAAGCCCTAGTCAGAGTTTAAATGTAACTATCTTTGAGCCTTATAGTATGACT
TAAAATACAAGATCTAAATATCCAGAAAAAAAAATCTGTAAATTTGATTCTCTGCCTTTG
GAGTTCACTAAGAAAACCCAGCCCAGCCAAGACATGCGAAGGAAGCCGCTGGAGACAAGA
ACTGTGTTAGTGTGTGGAGAGGGCATTGCTGGGGATTGCACATTGCACGGAGACCAGATG
TTGTATTAGGGAGTACGAGGCTGGAGTTCCCTCTTTTCCTAAACAATTGAATCATTGGTG
ATGGGTTTGTGTTGATGGTTTTTAAAGAAATGTATCTTATACTACTATATGCTAATAATC
AACTGAAATAAAACCAAAATCTGCACCCAAAAAAAA
|
|
1-139, gnl|bosTau2|chr11 (16029825-16029687) |
|
1-139, gnl|canFam2|chr17 (33892212-33892347) |
|
1-139, gnl|dasNov1|scaffold_16833 (10466-10600) |
|
1-139, gnl|galGal2|chrUn (139357267-139357156) |
|
1-139, gnl|hg17|chr2 (38868324-38868459) |
|
1-139, gnl|Hg17|chr2 (38868353-38868491) |
|
1-139, gnl|mm7|chr17 (78477249-78477384) |
|
1-139, gnl|Mm7|chr17 (78477278-78477416) |
|
1-139, gnl|monDom2|scaffold_23 (41944421-41944561) |
|
1-139, gnl|oryCun1|scaffold_204207 (19945-19810) |
|
1-139, gnl|panTro1|chr12 (40359033-40359168) |
|
1-139, gnl|rheMac2|chr13 (38714340-38714475) |
|
1-139, gnl|rn3|chr6 (3073989-3074124) |
|
1-139, gnl|tetNig1|chrUn_random (87932279-87932167) |
|
1-139, gnl|xenTro1|scaffold_41 (537345-537479) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-139, gnl|bosTau2|chr11 (16029825-16029687) |
|
1-139, gnl|canFam2|chr17 (33892212-33892347) |
|
1-139, gnl|dasNov1|scaffold_16833 (10466-10600) |
|
1-139, gnl|galGal2|chrUn (139357267-139357156) |
|
1-139, gnl|hg17|chr2 (38868324-38868459) |
|
1-139, gnl|Hg17|chr2 (38868353-38868491) |
|
1-139, gnl|mm7|chr17 (78477249-78477384) |
|
1-139, gnl|Mm7|chr17 (78477278-78477416) |
|
1-139, gnl|monDom2|scaffold_23 (41944421-41944561) |
|
1-139, gnl|oryCun1|scaffold_204207 (19945-19810) |
|
1-139, gnl|panTro1|chr12 (40359033-40359168) |
|
1-139, gnl|rheMac2|chr13 (38714340-38714475) |
|
1-139, gnl|rn3|chr6 (3073989-3074124) |
|
1-139, gnl|tetNig1|chrUn_random (87932279-87932167) |
|
1-139, gnl|xenTro1|scaffold_41 (537345-537479) |
|
cki (0.495704) |
|
elu (0.385356) |
|
cmu (0.372787) |
|
cty (0.31224) |
|
cte (0.29274) |
|
spl (0.286369) |
|
hyp (0.285673) |
|
cov (0.264306) |
|
kid (0.259471) |
|
bla (0.248694) |
|
spc (0.226732) |
|
tes (0.207814) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
col (0.195008) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
csp (0.161186) |
|
lun (0.150489) |
|
fat (0.147427) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
ste (0.135208) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
eru (0.120048) |
|
cki (0.495704) |
|
elu (0.385356) |
|
cmu (0.372787) |
|
cty (0.31224) |
|
cte (0.29274) |
|
spl (0.286369) |
|
hyp (0.285673) |
|
cov (0.264306) |
|
kid (0.259471) |
|
bla (0.248694) |
|
spc (0.226732) |
|
tes (0.207814) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
col (0.195008) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
csp (0.161186) |
|
lun (0.150489) |
|
fat (0.147427) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
ste (0.135208) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
eru (0.120048) |
