Non-Coding RNA Search

Ss1.1-Emb1-C0005216_P15.5

Sequence:


               
               TGGGATTAGTTGAAGATCTAAATAAAGGAGCTAAGCCTGTAGTTGTTCTGCAAAAACTGT
CTTTGGATGATGTTCAGAAACTTATTAAAGATAGAGAGGATAAATCAAGAAGTTCCCTTA
AACCTATCAAGAATAAACCATCAAAATCAAATAAAGGTAGTATAGATCAATCAGTGTTAA
AAGAATTACCCCCTGAACTCCTGGCAGAAATTGAATCTACCATGCCACTTTGTGAACGTG
TGAAAATGAATAAACGCAAGCGTAGCACAGTTAATGAAAAGCCAAAATATGCTGAAATCA
GTTCAGATGAAGATAATGATAGTGATGAAGCTTTTGAATCCTCTAGGAAACGACATAAAA
AAGATGATGATAAAGCTTGGGAATATGAAGAGCGTGACAGAAGAAGCTCTGGGGATCATA
GGAGAAGTGGCCACTCTCATGAAGGAAGAAGGAGTTCGGGTGGTGGTCGTTATCGAAACC
GAAGTCCATCAGATTCTGACATGGAAGATTATTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGATTAGTTGAAGATCTAAATAAAGGAGCTAAGCCTGTAGTTGTTCTGCAAAAACTGT
CTTTGGATGATGTTCAGAAACTTATTAAAGATAGAGAGGATAAATCAAGAAGTTCCCTTA
AACCTATCAAGAATAAACCATCAAAATCAAATAAAGGTAGTATAGATCAATCAGTGTTAA
AAGAATTACCCCCTGAACTCCTGGCAGAAATTGAATCTACCATGCCACTTTGTGAACGTG
TGAAAATGAATAAACGCAAGCGTAGCACAGTTAATGAAAAGCCAAAATATGCTGAAATCA
GTTCAGATGAAGATAATGATAGTGATGAAGCTTTTGAATCCTCTAGGAAACGACATAAAA
AAGATGATGATAAAGCTTGGGAATATGAAGAGCGTGACAGAAGAAGCTCTGGGGATCATA
GGAGAAGTGGCCACTCTCATGAAGGAAGAAGGAGTTCGGGTGGTGGTCGTTATCGAAACC
GAAGTCCATCAGATTCTGACATGGAAGATTATTCTC

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-159, gnl|bosTau2|chr20 (25322933-25323091)
               

               
               1-159, gnl|canFam2|chr4 (74867158-74866993)
               

               
               1-159, gnl|danRer3|chr10 (33975988-33975846)
               

               
               1-159, gnl|dasNov1|scaffold_9377 (79711-79543)
               

               
               1-159, gnl|echTel1|scaffold_268270 (8766-8601)
               

               
               1-159, gnl|fr1|chrUn (250241904-250242075)
               

               
               1-159, gnl|galGal2|chrZ_random (10402803-10402971)
               

               
               1-159, gnl|hg17|chr5 (37021981-37022146)
               

               
               1-159, gnl|Hg17|chr5 (37022005-37022163)
               

               
               1-159, gnl|loxAfr1|scaffold_23586 (5338-5173)
               

               
               1-159, gnl|mm7|chr15 (8177214-8177049)
               

               
               1-159, gnl|Mm7|chr15 (8177188-8177030)
               

               
               1-159, gnl|monDom2|scaffold_20 (35214590-35214425)
               

               
               1-159, gnl|oryCun1|scaffold_209169 (52752-52916)
               

               
               1-159, gnl|panTro1|chr4 (79797276-79797112)
               

               
               1-159, gnl|rheMac2|chr6 (36812577-36812742)
               

               
               1-159, gnl|rn3|chr2 (57904338-57904173)
               

               
               1-159, gnl|tetNig1|chr4 (2189504-2189380)
               

               
               1-159, gnl|xenTro1|scaffold_363 (1009009-1008844)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-159, gnl|bosTau2|chr20 (25322933-25323091)
               

               
               1-159, gnl|canFam2|chr4 (74867158-74866993)
               

               
               1-159, gnl|danRer3|chr10 (33975988-33975846)
               

               
               1-159, gnl|dasNov1|scaffold_9377 (79711-79543)
               

               
               1-159, gnl|echTel1|scaffold_268270 (8766-8601)
               

               
               1-159, gnl|fr1|chrUn (250241904-250242075)
               

               
               1-159, gnl|galGal2|chrZ_random (10402803-10402971)
               

               
               1-159, gnl|hg17|chr5 (37021981-37022146)
               

               
               1-159, gnl|Hg17|chr5 (37022005-37022163)
               

               
               1-159, gnl|loxAfr1|scaffold_23586 (5338-5173)
               

               
               1-159, gnl|mm7|chr15 (8177214-8177049)
               

               
               1-159, gnl|Mm7|chr15 (8177188-8177030)
               

               
               1-159, gnl|monDom2|scaffold_20 (35214590-35214425)
               

               
               1-159, gnl|oryCun1|scaffold_209169 (52752-52916)
               

               
               1-159, gnl|panTro1|chr4 (79797276-79797112)
               

               
               1-159, gnl|rheMac2|chr6 (36812577-36812742)
               

               
               1-159, gnl|rn3|chr2 (57904338-57904173)
               

               
               1-159, gnl|tetNig1|chr4 (2189504-2189380)
               

               
               1-159, gnl|xenTro1|scaffold_363 (1009009-1008844)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               rec (0.346141)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)

	1-159, gnl\|bosTau2\|chr20 (25322933-25323091)
	1-159, gnl\|canFam2\|chr4 (74867158-74866993)
	1-159, gnl\|danRer3\|chr10 (33975988-33975846)
	1-159, gnl\|dasNov1\|scaffold_9377 (79711-79543)
	1-159, gnl\|echTel1\|scaffold_268270 (8766-8601)
	1-159, gnl\|fr1\|chrUn (250241904-250242075)
	1-159, gnl\|galGal2\|chrZ_random (10402803-10402971)
	1-159, gnl\|hg17\|chr5 (37021981-37022146)
	1-159, gnl\|Hg17\|chr5 (37022005-37022163)
	1-159, gnl\|loxAfr1\|scaffold_23586 (5338-5173)
	1-159, gnl\|mm7\|chr15 (8177214-8177049)
	1-159, gnl\|Mm7\|chr15 (8177188-8177030)
	1-159, gnl\|monDom2\|scaffold_20 (35214590-35214425)
	1-159, gnl\|oryCun1\|scaffold_209169 (52752-52916)
	1-159, gnl\|panTro1\|chr4 (79797276-79797112)
	1-159, gnl\|rheMac2\|chr6 (36812577-36812742)
	1-159, gnl\|rn3\|chr2 (57904338-57904173)
	1-159, gnl\|tetNig1\|chr4 (2189504-2189380)
	1-159, gnl\|xenTro1\|scaffold_363 (1009009-1008844)