Ss1.1-Emb1-C0005217_E10.5
|
GCAGCGAGTGCCACGTCCCAAGTGCTACGCGGAGGAGCGGAGCGGGTGGTGCGCGGGAGG
CGGGAGCTGCGCGAAGCCCGGCCCGGCCACACTGATCGCCCGCCGCCATGGGCTCCTCGC
AGAGCGTCGAGATCCCAGGCGGGGGCACGGAGGGCTACCACGTCCTGCGGGTACAAGAAA
ATTCCCCAGGACATAGAGCTGGACTGGAGCCATTCTTTGATTTTATTGTTTCTATTAATG
GTTCGAGATTAAATAAAGACAATGACACTCTTAAGGATCTACTGAAAGCAAATGTTGAAA
AGCCTGTAAAAATGCTTATCTACAGTAGTAAAACACTGGAGCTGCGAGAGACCTCAGTCA
CACCAAGTAACATGTGGGGTGGCCAGGGCTTGTTGGGAGTGAGCATTCGTTTCTGCAGCT
TTGATGGGGCAAATGAAAACGTTTGGCATGTGTTGGAAGTGGAATCTAATTCTCCTGCAG
CACTGGCGGGTCTTAGACCTCACAGTGATTATATCATTGGAGCAGATACAGTCATGAATG
AGTCTGAAGATCTGTTCAGCCTTATTGAAACACATGAAGCAAAACCATTGAAACTTTATG
TGTATAATACCGACACTGATAACTGTCGAGAAGTGATTATTACACCAAATTCTGCATGGG
GTGGAGAAGGCAGCCTAGGATGTGGCATTGGATATGGTTATTTGCATCGAATACCTACAC
GCCCATTTGAAGAAGGAAAGAAAATTTCTCTTCCAGGACAAATGACTGGTACACCTATTA
CTCCTCTTAAAGATGGATTTACGGAGGTCCAGCTGTCTTCAGTTAATCCCCCATCTTTGT
CACCACCTGGAACTACAGAAATTGAACAGGGTCTGTCTGGACTTTCTATTAGCTCAACTC
CACCAGCCGTCAGTAATGTTCTCAGTACAGGTGTACCAACAGTACCGTTATTGCCACCAC
AAGTAAACCAGTCCCTCACTTCTGTGCCACCAATGAACCCAGCTACTACATTACCAGGTC
TGATACCTTTGCCAGCAGGACTACCTAACCTCCCCACCCTCCCCAATCTCAACCTCCCCG
CGCCCATCGTGCCAGGTGTCGGCTTACCGGAGCTCGTGAACCCGGGTTTGCCACCTCTTC
CTTCCCTGCCTCCCCGAAACTTACCTGGCATCGCACCTCTCCCCTTGCCGACCGAGTTCC
TCCCGTCCTTCCCTTTGGTTCCAGAGGTCTCTACCGCAGCAGGCTCAGGGGAGCTGCTGT
CCTCCCTCCCGCCTGCCAGCAGCCCACCCTCCGACCCCGTCCCGACCTCTGTAAGGGCAG
ACGCTGCCTCCGCGCTCGCTGTGGCTGTGACGCCCCCAACTCCCAAGGCCCCCACCACTG
CTGAGGACAGAGCCAGCGAGTCCGCCCCAGCCAGCGAGAAGCCTGCCTCTGCGGGTACAG
ATGCAAATGCCTCTGAGTCACCGTAGCTGTGGACCGGCCTTCGGAATTGGCGTGGTGTGC
TTATTTAACCACGGAAGCGAGTCTGGAGCTGCAAACTATCCTTAATTTCGTACTAGTTTG
TACCGTATCTTTAGGCGTCCTGTAAATAACTCTAAGGGGAAAACTAAGCAAGAGGATGTG
GGGCTTGTATCCTGCCGGTCCGCGTGGGGCTCACGGGCCGGGGAGAGAAAGGTCAGAAAG
TGCTTGTATTTTAAAACAACCAAAAAGAATTGGAAGGGTGGCTTGCTGCCAGGTTTCCAC
TGCCATTCTTGGGGGTGTACATCTTTGGGAAAGGTGGTGACGGGGTACCTACTAGGCTCC
CTGTTCTCCTGCTGCTCCTTCTGTAAGAAAATGAAATATTTTATGCCTAATACCCACACT
CAACGTTTCTTGTATTTTGTAAATTGTTTGCAAGAATGCAGACCACCTCACTAAACCGTG
AAAGGAAAAGATGGTTGAGCTGGTTTACTTGGGATCTCTATTAAGGTTTACACAAAAATT
CCAACTAAAGATGTTTGTTAAAGTTACATGATGTGCACTATTAATTGAACATCTTTTTAT
TCAGCCTGTACACAAATCTTTGTTTTGAGCTCTCAGAATTACTCAGACAACATTTTGTAA
CTGCTGCTGTTGTTGCTTTATACGTCCACCATAAAACGGCCATTTAGAAAGAGAAGAAAT
AAAGGAGATGTTGCACAGTTTTAAACCAGAAGGTGGCACTTTGTAGCTACTCATAATATT
ACAGCTGTACTGGGAAAGCATAAACACAGCAATAAATTGCAGTAATTTTGAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCAGCGAGTGCCACGTCCCAAGTGCTACGCGGAGGAGCGGAGCGGGTGGTGCGCGGGAGG
CGGGAGCTGCGCGAAGCCCGGCCCGGCCACACTGATCGCCCGCCGCCATGGGCTCCTCGC
AGAGCGTCGAGATCCCAGGCGGGGGCACGGAGGGCTACCACGTCCTGCGGGTACAAGAAA
ATTCCCCAGGACATAGAGCTGGACTGGAGCCATTCTTTGATTTTATTGTTTCTATTAATG
GTTCGAGATTAAATAAAGACAATGACACTCTTAAGGATCTACTGAAAGCAAATGTTGAAA
AGCCTGTAAAAATGCTTATCTACAGTAGTAAAACACTGGAGCTGCGAGAGACCTCAGTCA
CACCAAGTAACATGTGGGGTGGCCAGGGCTTGTTGGGAGTGAGCATTCGTTTCTGCAGCT
TTGATGGGGCAAATGAAAACGTTTGGCATGTGTTGGAAGTGGAATCTAATTCTCCTGCAG
CACTGGCGGGTCTTAGACCTCACAGTGATTATATCATTGGAGCAGATACAGTCATGAATG
AGTCTGAAGATCTGTTCAGCCTTATTGAAACACATGAAGCAAAACCATTGAAACTTTATG
TGTATAATACCGACACTGATAACTGTCGAGAAGTGATTATTACACCAAATTCTGCATGGG
GTGGAGAAGGCAGCCTAGGATGTGGCATTGGATATGGTTATTTGCATCGAATACCTACAC
GCCCATTTGAAGAAGGAAAGAAAATTTCTCTTCCAGGACAAATGACTGGTACACCTATTA
CTCCTCTTAAAGATGGATTTACGGAGGTCCAGCTGTCTTCAGTTAATCCCCCATCTTTGT
CACCACCTGGAACTACAGAAATTGAACAGGGTCTGTCTGGACTTTCTATTAGCTCAACTC
CACCAGCCGTCAGTAATGTTCTCAGTACAGGTGTACCAACAGTACCGTTATTGCCACCAC
AAGTAAACCAGTCCCTCACTTCTGTGCCACCAATGAACCCAGCTACTACATTACCAGGTC
TGATACCTTTGCCAGCAGGACTACCTAACCTCCCCACCCTCCCCAATCTCAACCTCCCCG
CGCCCATCGTGCCAGGTGTCGGCTTACCGGAGCTCGTGAACCCGGGTTTGCCACCTCTTC
CTTCCCTGCCTCCCCGAAACTTACCTGGCATCGCACCTCTCCCCTTGCCGACCGAGTTCC
TCCCGTCCTTCCCTTTGGTTCCAGAGGTCTCTACCGCAGCAGGCTCAGGGGAGCTGCTGT
CCTCCCTCCCGCCTGCCAGCAGCCCACCCTCCGACCCCGTCCCGACCTCTGTAAGGGCAG
ACGCTGCCTCCGCGCTCGCTGTGGCTGTGACGCCCCCAACTCCCAAGGCCCCCACCACTG
CTGAGGACAGAGCCAGCGAGTCCGCCCCAGCCAGCGAGAAGCCTGCCTCTGCGGGTACAG
ATGCAAATGCCTCTGAGTCACCGTAGCTGTGGACCGGCCTTCGGAATTGGCGTGGTGTGC
TTATTTAACCACGGAAGCGAGTCTGGAGCTGCAAACTATCCTTAATTTCGTACTAGTTTG
TACCGTATCTTTAGGCGTCCTGTAAATAACTCTAAGGGGAAAACTAAGCAAGAGGATGTG
GGGCTTGTATCCTGCCGGTCCGCGTGGGGCTCACGGGCCGGGGAGAGAAAGGTCAGAAAG
TGCTTGTATTTTAAAACAACCAAAAAGAATTGGAAGGGTGGCTTGCTGCCAGGTTTCCAC
TGCCATTCTTGGGGGTGTACATCTTTGGGAAAGGTGGTGACGGGGTACCTACTAGGCTCC
CTGTTCTCCTGCTGCTCCTTCTGTAAGAAAATGAAATATTTTATGCCTAATACCCACACT
CAACGTTTCTTGTATTTTGTAAATTGTTTGCAAGAATGCAGACCACCTCACTAAACCGTG
AAAGGAAAAGATGGTTGAGCTGGTTTACTTGGGATCTCTATTAAGGTTTACACAAAAATT
CCAACTAAAGATGTTTGTTAAAGTTACATGATGTGCACTATTAATTGAACATCTTTTTAT
TCAGCCTGTACACAAATCTTTGTTTTGAGCTCTCAGAATTACTCAGACAACATTTTGTAA
CTGCTGCTGTTGTTGCTTTATACGTCCACCATAAAACGGCCATTTAGAAAGAGAAGAAAT
AAAGGAGATGTTGCACAGTTTTAAACCAGAAGGTGGCACTTTGTAGCTACTCATAATATT
ACAGCTGTACTGGGAAAGCATAAACACAGCAATAAATTGCAGTAATTTTGAAAAAAAAAA |
|
1-173, gnl|bosTau2|chr2 (16379398-16379225) |
|
1-173, gnl|canFam2|chr36 (18468011-18468424) |
|
1-173, gnl|dasNov1|scaffold_92659 (5102-5504) |
|
1-173, gnl|echTel1|scaffold_276369 (44698-44266) |
|
1-173, gnl|hg17|chr2 (171610910-171611358) |
|
1-173, gnl|Hg17|chr2 (171611251-171611423) |
|
1-173, gnl|loxAfr1|scaffold_20934 (6561-6115) |
|
1-173, gnl|mm7|chr2 (70500026-70500408) |
|
1-173, gnl|Mm7|chr2 (70500305-70500473) |
|
1-173, gnl|monDom2|scaffold_2 (69585975-69586469) |
|
1-173, gnl|oryCun1|scaffold_180641 (88754-88345) |
|
1-173, gnl|panTro1|chr13_random (18898114-18897666) |
|
1-173, gnl|rheMac2|chr12 (34612172-34612613) |
|
1-173, gnl|rn3|chr3 (52791152-52791547) |
| |
|
252-462, gnl|bosTau2|chr22 (11288808-11289019) |
|
252-462, gnl|Hg17|chr3 (39119376-39119148) |
|
252-462, gnl|Mm7|chr9 (119628719-119628512) |
| |
|
535-964, gnl|bosTau2|chr11 (49072131-49072565) |
| |
|
1125-2270, gnl|bosTau2|chr2 (16347656-16346509) |
|
1125-2270, gnl|Hg17|chr2 (171647806-171648933) |
|
1125-2270, gnl|Mm7|chr2 (70529367-70530430) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-173, gnl|bosTau2|chr2 (16379398-16379225) |
|
1-173, gnl|canFam2|chr36 (18468011-18468424) |
|
1-173, gnl|dasNov1|scaffold_92659 (5102-5504) |
|
1-173, gnl|echTel1|scaffold_276369 (44698-44266) |
|
1-173, gnl|hg17|chr2 (171610910-171611358) |
|
1-173, gnl|Hg17|chr2 (171611251-171611423) |
|
1-173, gnl|loxAfr1|scaffold_20934 (6561-6115) |
|
1-173, gnl|mm7|chr2 (70500026-70500408) |
|
1-173, gnl|Mm7|chr2 (70500305-70500473) |
|
1-173, gnl|monDom2|scaffold_2 (69585975-69586469) |
|
1-173, gnl|oryCun1|scaffold_180641 (88754-88345) |
|
1-173, gnl|panTro1|chr13_random (18898114-18897666) |
|
1-173, gnl|rheMac2|chr12 (34612172-34612613) |
|
1-173, gnl|rn3|chr3 (52791152-52791547) |
| |
|
252-462, gnl|bosTau2|chr22 (11288808-11289019) |
|
252-462, gnl|Hg17|chr3 (39119376-39119148) |
|
252-462, gnl|Mm7|chr9 (119628719-119628512) |
| |
|
535-964, gnl|bosTau2|chr11 (49072131-49072565) |
| |
|
1125-2270, gnl|bosTau2|chr2 (16347656-16346509) |
|
1125-2270, gnl|Hg17|chr2 (171647806-171648933) |
|
1125-2270, gnl|Mm7|chr2 (70529367-70530430) |
|
cbr (5.88687) |
|
rec (0.519211) |
|
mgp (0.461361) |
|
amn (0.417711) |
|
ova (0.387397) |
|
sin (0.349895) |
|
vin (0.332557) |
|
csp (0.322373) |
|
fat (0.294855) |
|
spl (0.286369) |
|
che (0.272628) |
|
ste (0.270416) |
|
thg (0.253582) |
|
bla (0.248694) |
|
eep (0.245128) |
|
clu (0.239292) |
|
ece (0.229305) |
|
nms (0.213858) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
sag (0.182715) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
nje (0.16592) |
|
cje (0.165235) |
|
cki (0.165235) |
|
lun (0.150489) |
|
isp (0.150376) |
|
ski (0.146735) |
|
lin (0.145603) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ret (0.128733) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
cbr (5.88687) |
|
rec (0.519211) |
|
mgp (0.461361) |
|
amn (0.417711) |
|
ova (0.387397) |
|
sin (0.349895) |
|
vin (0.332557) |
|
csp (0.322373) |
|
fat (0.294855) |
|
spl (0.286369) |
|
che (0.272628) |
|
ste (0.270416) |
|
thg (0.253582) |
|
bla (0.248694) |
|
eep (0.245128) |
|
clu (0.239292) |
|
ece (0.229305) |
|
nms (0.213858) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
sag (0.182715) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
nje (0.16592) |
|
cje (0.165235) |
|
cki (0.165235) |
|
lun (0.150489) |
|
isp (0.150376) |
|
ski (0.146735) |
|
lin (0.145603) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ret (0.128733) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
