Non-Coding RNA Search

Ss1.1-Emb1-C0005217_F09.5

Sequence:


               
               TCTGTCGAAGCGGAGGTTGCGGAGTTTCAGCAGGCAATGGAAAAGGAGTCAGGATTGAAT
TTGATGATGAAAATGATATAAATGTTGGTGGAACTAACACAGCTGTAGACACAACTTCAG
TAGCAGAAGCAAGACACAACCCTAGCATAGGGGAGGGAAGTGTTGGTGGTCTGACTGGCA
GTTTGAGTGCAAGTGGAAGCCACATGGATCGAATAGGAGCCATCCGGGACAACCTGAGTG
AAACAGCCAGCACCATGGCACTAGCTGGAGCCAGTATAACAGGGAGTTTGTCAGGAAGCG
CCATGGTAAACTGTTTCAACAGGTTGGAAGTACAAGCAGATGTACAGAAAGAACGGTACA
GTCTAAGTGGAGAATCTGGCACTGTCAGTTTGGGAACAGTTAGTGATAACGCCAGCACCA
AGGCAATGGCAGGATCCATTCTAAATTCCTACATCCCATTGGACAAAGAAGGCAACAGTA
TGGAGGTTCAAGTAGATATTGAATCAAAGCCATCCAAATTCAGGCACAACAGTGGAAGCA
GCAGTGTAGACGATGGCAGTGCTGCCCGAAGTCATCCTGGGGGTTTGTCTGGTGGTTTGC
CTGAAGGTAAATCCAGTGCCACCAAGTGGTCCAAAGAAGCAACAGCAGGAAAGAAATCAA
AAAGTGGTAAATTGAGGAAAAAGAGTAACATGAAGATAAATGAGACCAGAGAGGACATGG
ATGCACAACTGTTAGAACAACAAAGCACGAACTCGAGTGAATTTGAGGCTCCATCCCTCA
GTGACAGTATGCCATCTGTAGCAGATTCCCACTCTAGTCATTTTTCTGAATTTAGTTGTT
CTGACCTAGAAAGCATGAAAACTTCTTGTAGCCATGGTTCAACTGATTATCATGCCCGCT
TTGCTACTGTTAACATTCTTCCTGAGGTAGAAAATGACCGTCTGGAAAATTCCCCACATC
AGTGTAGCATTTCTGTGCTTACTAAAACTGCTTCGTGTTCAGAAGATCCACAGTTGAATC
ATATTGCTGAAGAACACAGTAACAATGGAATAAGGCCCAATGTTGATTTATATTTTGGTA
ATGCACTAAAAGAAACAAATAACAACCACTCACATCAGACAATGGAATTAAAAGTTGCAA
TTCAGACTGATATATAGACCTATAAATGCTGCAAAATAATTACCACTTGAAAAACCTTGT
TTGGAGCTGGTTGAACTACTCCTGACTATTTTAAGTTTCAAGTTACCAGCAAATGCCGGG
TTATGTAGTCATAAGGCAGATACATTTTCTATGTTCAGCAAAGCATTGTGTTTCGTGTGG
ATATTAATTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTCGAAGCGGAGGTTGCGGAGTTTCAGCAGGCAATGGAAAAGGAGTCAGGATTGAAT
TTGATGATGAAAATGATATAAATGTTGGTGGAACTAACACAGCTGTAGACACAACTTCAG
TAGCAGAAGCAAGACACAACCCTAGCATAGGGGAGGGAAGTGTTGGTGGTCTGACTGGCA
GTTTGAGTGCAAGTGGAAGCCACATGGATCGAATAGGAGCCATCCGGGACAACCTGAGTG
AAACAGCCAGCACCATGGCACTAGCTGGAGCCAGTATAACAGGGAGTTTGTCAGGAAGCG
CCATGGTAAACTGTTTCAACAGGTTGGAAGTACAAGCAGATGTACAGAAAGAACGGTACA
GTCTAAGTGGAGAATCTGGCACTGTCAGTTTGGGAACAGTTAGTGATAACGCCAGCACCA
AGGCAATGGCAGGATCCATTCTAAATTCCTACATCCCATTGGACAAAGAAGGCAACAGTA
TGGAGGTTCAAGTAGATATTGAATCAAAGCCATCCAAATTCAGGCACAACAGTGGAAGCA
GCAGTGTAGACGATGGCAGTGCTGCCCGAAGTCATCCTGGGGGTTTGTCTGGTGGTTTGC
CTGAAGGTAAATCCAGTGCCACCAAGTGGTCCAAAGAAGCAACAGCAGGAAAGAAATCAA
AAAGTGGTAAATTGAGGAAAAAGAGTAACATGAAGATAAATGAGACCAGAGAGGACATGG
ATGCACAACTGTTAGAACAACAAAGCACGAACTCGAGTGAATTTGAGGCTCCATCCCTCA
GTGACAGTATGCCATCTGTAGCAGATTCCCACTCTAGTCATTTTTCTGAATTTAGTTGTT
CTGACCTAGAAAGCATGAAAACTTCTTGTAGCCATGGTTCAACTGATTATCATGCCCGCT
TTGCTACTGTTAACATTCTTCCTGAGGTAGAAAATGACCGTCTGGAAAATTCCCCACATC
AGTGTAGCATTTCTGTGCTTACTAAAACTGCTTCGTGTTCAGAAGATCCACAGTTGAATC
ATATTGCTGAAGAACACAGTAACAATGGAATAAGGCCCAATGTTGATTTATATTTTGGTA
ATGCACTAAAAGAAACAAATAACAACCACTCACATCAGACAATGGAATTAAAAGTTGCAA
TTCAGACTGATATATAGACCTATAAATGCTGCAAAATAATTACCACTTGAAAAACCTTGT
TTGGAGCTGGTTGAACTACTCCTGACTATTTTAAGTTTCAAGTTACCAGCAAATGCCGGG
TTATGTAGTCATAAGGCAGATACATTTTCTATGTTCAGCAAAGCATTGTGTTTCGTGTGG
ATATTAATTACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10435397|dbj|BAB14581.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10435397|dbj|BAB14581.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               106-219, - strand, RNAz p=0.932578
               

               
               212-329, + strand, RNAz p=0.994876
               

               
               664-823, - strand, RNAz p=0.877805

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-219, - strand, RNAz p=0.932578
               

               
               212-329, + strand, RNAz p=0.994876
               

               
               664-823, - strand, RNAz p=0.877805

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               106-329, gnl|bosTau2|chr14 (38062385-38062162)
               

               
               106-329, gnl|canFam2|chr13 (5161504-5161734)
               

               
               106-329, gnl|danRer3|chr19 (42909339-42909118)
               

               
               106-329, gnl|dasNov1|scaffold_4297 (36682-36916)
               

               
               106-329, gnl|fr1|chrUn (11940988-11940765)
               

               
               106-329, gnl|galGal2|chr2 (127526326-127526546)
               

               
               106-329, gnl|hg17|chr8 (101342942-101343165)
               

               
               106-329, gnl|Hg17|chr8 (101343162-101342939)
               

               
               106-329, gnl|loxAfr1|scaffold_11938 (22848-23082)
               

               
               106-329, gnl|mm7|chr15 (36354740-36354970)
               

               
               106-329, gnl|Mm7|chr15 (36354967-36354744)
               

               
               106-329, gnl|monDom2|scaffold_3 (63683622-63683394)
               

               
               106-329, gnl|oryCun1|scaffold_206269 (43391-43622)
               

               
               106-329, gnl|panTro1|chr7 (103713583-103713806)
               

               
               106-329, gnl|rheMac2|chr8 (102778254-102778477)
               

               
               106-329, gnl|rn3|chr7 (71789766-71789992)
               

               
               106-329, gnl|tetNig1|chr8 (10036566-10036787)
               

               
               106-329, gnl|xenTro1|scaffold_59 (884304-884084)
               


               
               464-1332, gnl|bosTau2|chr14 (38060035-38059165)
               

               
               464-1332, gnl|Hg17|chr8 (101340653-101339787)
               

               
               464-1332, gnl|Mm7|chr15 (36351403-36350533)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-329, gnl|bosTau2|chr14 (38062385-38062162)
               

               
               106-329, gnl|canFam2|chr13 (5161504-5161734)
               

               
               106-329, gnl|danRer3|chr19 (42909339-42909118)
               

               
               106-329, gnl|dasNov1|scaffold_4297 (36682-36916)
               

               
               106-329, gnl|fr1|chrUn (11940988-11940765)
               

               
               106-329, gnl|galGal2|chr2 (127526326-127526546)
               

               
               106-329, gnl|hg17|chr8 (101342942-101343165)
               

               
               106-329, gnl|Hg17|chr8 (101343162-101342939)
               

               
               106-329, gnl|loxAfr1|scaffold_11938 (22848-23082)
               

               
               106-329, gnl|mm7|chr15 (36354740-36354970)
               

               
               106-329, gnl|Mm7|chr15 (36354967-36354744)
               

               
               106-329, gnl|monDom2|scaffold_3 (63683622-63683394)
               

               
               106-329, gnl|oryCun1|scaffold_206269 (43391-43622)
               

               
               106-329, gnl|panTro1|chr7 (103713583-103713806)
               

               
               106-329, gnl|rheMac2|chr8 (102778254-102778477)
               

               
               106-329, gnl|rn3|chr7 (71789766-71789992)
               

               
               106-329, gnl|tetNig1|chr8 (10036566-10036787)
               

               
               106-329, gnl|xenTro1|scaffold_59 (884304-884084)
               


               
               464-1332, gnl|bosTau2|chr14 (38060035-38059165)
               

               
               464-1332, gnl|Hg17|chr8 (101340653-101339787)
               

               
               464-1332, gnl|Mm7|chr15 (36351403-36350533)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tes (0.415628)
               

               
               hea (0.204499)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               hea (0.204499)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)

	106-219, - strand, RNAz p=0.932578
	212-329, + strand, RNAz p=0.994876
	664-823, - strand, RNAz p=0.877805

	106-329, gnl\|bosTau2\|chr14 (38062385-38062162)
	106-329, gnl\|canFam2\|chr13 (5161504-5161734)
	106-329, gnl\|danRer3\|chr19 (42909339-42909118)
	106-329, gnl\|dasNov1\|scaffold_4297 (36682-36916)
	106-329, gnl\|fr1\|chrUn (11940988-11940765)
	106-329, gnl\|galGal2\|chr2 (127526326-127526546)
	106-329, gnl\|hg17\|chr8 (101342942-101343165)
	106-329, gnl\|Hg17\|chr8 (101343162-101342939)
	106-329, gnl\|loxAfr1\|scaffold_11938 (22848-23082)
	106-329, gnl\|mm7\|chr15 (36354740-36354970)
	106-329, gnl\|Mm7\|chr15 (36354967-36354744)
	106-329, gnl\|monDom2\|scaffold_3 (63683622-63683394)
	106-329, gnl\|oryCun1\|scaffold_206269 (43391-43622)
	106-329, gnl\|panTro1\|chr7 (103713583-103713806)
	106-329, gnl\|rheMac2\|chr8 (102778254-102778477)
	106-329, gnl\|rn3\|chr7 (71789766-71789992)
	106-329, gnl\|tetNig1\|chr8 (10036566-10036787)
	106-329, gnl\|xenTro1\|scaffold_59 (884304-884084)

	464-1332, gnl\|bosTau2\|chr14 (38060035-38059165)
	464-1332, gnl\|Hg17\|chr8 (101340653-101339787)
	464-1332, gnl\|Mm7\|chr15 (36351403-36350533)