Non-Coding RNA Search

Ss1.1-Emb1-C0005217_H20.5

Sequence:


               
               TTGGCATTACAAAAGAACAAGTATCTTACAAAGAGAAAACACACCAAAAATGTAGGTCTA
AAAGAATTGCACGGGCCTTAGGGCGAATGCTCATCTTAAACCTCGCTCGAGGGAAGTTTT
TTCAAATTTCAAGCAAGACCATTTACTTAATGTGAAGTTTTGGAAAGTTATAAAGGTGTA
TGTTTTAGCCGTATGATTTTAATTTTTATTTTGCTTCTTTTAGGTTTGTTCTTATTTAAA
GCAATATGATTGTGTGACTACCTGTAGTTACACTCGTGTTTCAATCAGATCAGATTGTTG
TATTTATTCCACTATTTTGCATTTAAATGATAACATAAAAGATATAAAAAATTTAAAACT
GCTATTTTTCTTATAGAAGAGAAAATGAGTGTTGGTGATTGTATTTTAATTATTTAAGCG
TCTCTGTTTACCTGCCTAGGAAAACATTTTATGGCAGTCTTATGTGCAAAGATCGTAAAA
GGACAAAAAATTTAAACTGCTTATAATAATCCAGGAGTTGCATTATAGCCAGTAGTAAAA
AAAATAATAATAATAATAAAACCTTGTCTATAGCTGTAGATGGGCTTCACATCTGTAAAG
CAATCAATTGTATATTTTTGTGACGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTT
GTGTAAATGTATTTATTTTATATTGTATATATTGTTAAATGCAAAAAGGAGATATGATTC
TGTAACTCCAATCAGTTCAGATGTGTAACTCAAATTATTATGCCTTTCAGGATGACAGTA
GAGCAATATTAAAACATGCTTCCACTTTTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGCATTACAAAAGAACAAGTATCTTACAAAGAGAAAACACACCAAAAATGTAGGTCTA
AAAGAATTGCACGGGCCTTAGGGCGAATGCTCATCTTAAACCTCGCTCGAGGGAAGTTTT
TTCAAATTTCAAGCAAGACCATTTACTTAATGTGAAGTTTTGGAAAGTTATAAAGGTGTA
TGTTTTAGCCGTATGATTTTAATTTTTATTTTGCTTCTTTTAGGTTTGTTCTTATTTAAA
GCAATATGATTGTGTGACTACCTGTAGTTACACTCGTGTTTCAATCAGATCAGATTGTTG
TATTTATTCCACTATTTTGCATTTAAATGATAACATAAAAGATATAAAAAATTTAAAACT
GCTATTTTTCTTATAGAAGAGAAAATGAGTGTTGGTGATTGTATTTTAATTATTTAAGCG
TCTCTGTTTACCTGCCTAGGAAAACATTTTATGGCAGTCTTATGTGCAAAGATCGTAAAA
GGACAAAAAATTTAAACTGCTTATAATAATCCAGGAGTTGCATTATAGCCAGTAGTAAAA
AAAATAATAATAATAATAAAACCTTGTCTATAGCTGTAGATGGGCTTCACATCTGTAAAG
CAATCAATTGTATATTTTTGTGACGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTT
GTGTAAATGTATTTATTTTATATTGTATATATTGTTAAATGCAAAAAGGAGATATGATTC
TGTAACTCCAATCAGTTCAGATGTGTAACTCAAATTATTATGCCTTTCAGGATGACAGTA
GAGCAATATTAAAACATGCTTCCACTTTTAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               4-809, gnl|bosTau2|chr16 (8360861-8361667)
               

               
               4-809, gnl|Hg17|chr1 (213065795-213064990)
               

               
               4-809, gnl|Mm7|chr1 (187740321-187741188)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-809, gnl|bosTau2|chr16 (8360861-8361667)
               

               
               4-809, gnl|Hg17|chr1 (213065795-213064990)
               

               
               4-809, gnl|Mm7|chr1 (187740321-187741188)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               pty (0.142714)
               

               
               ret (0.128733)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               pty (0.142714)
               

               
               ret (0.128733)

	4-809, gnl\|bosTau2\|chr16 (8360861-8361667)
	4-809, gnl\|Hg17\|chr1 (213065795-213064990)
	4-809, gnl\|Mm7\|chr1 (187740321-187741188)