Non-Coding RNA Search

Ss1.1-Emb1-C0005217_I22.5

Sequence:


               
               GCCTGATGAACCTACTTAAATAAAATCCAGTTTGTCCTCTATCAAAGTCTATCCCTGACT
CATTCAGATACAACCTGACTTTGCTAACCATGGTTGCAGAAGGAATTTTGGTTGAGGCTC
TTACAAGAGTAAATCCCTCTACAAGAAAAGAAAGAGAAAAGAAAATGTGAAATCCACAAA
CTTTTGTGAAAATCAAATATTTGGGGGGAATAGGCACAGGTGAGTCTGTTCATATAATGA
ATACAGTTGTCAACATAAGTAAGCTCTTTGAACTATGTAATTTCTAAGTTAATAATCGAT
CTCTCTTAGTCTATAGTTGACATTAACCTCAGTCAATCAGATGGATAGATAGGGTCCCCA
AGTCCAGAGACACAATGAAATCAAGGCTTCTGAAAATTAAATGTGATTTTAAAATATTTT
TATTGAAGTTAAACAGTGAGTTCCAAAAAGAGGTTAAATAGGTTATGAGAGAGAAAAGAT
GGGGAATAACCACTGTGTGCCAGAATTATTGCTGGATGTTTATTAATCTCAGGCAAAAAA
TTATTCCTAGAGAAACAACATCATCATCATCCCTGTTTATAGAGAAGAAAACCGAGGCTT
GGAAAAGTAGCTTGACCCAAGATTCAGAGTTTACAAGTACAAAACTCATGTACTGTGTTT
TATACCACACCACCTCTATAAAAGTGAGATCATTTTAAATAGTGGTTCTTTTTTGTTTAA
CTCAGTGAAAATGAATTTACAATAGAACCATTGCTTTGAACTCAATAAATATAAAATGTA
CTGTGCTAATCAAATTTGTGCATTTTCAGTGGGATTTCAAATTTTAGTCATAAGGCAATT
ATTTTCATTTCCCTGAATATATTTCTGGTACCTACAAGTGTGCAATAACATAATTTTTAA
ATTACTTGGAATTTTGAGAAAAATTAAAATATTATTTGTAAAATATGTAAATGGATGTAC
TCATATCCATTTATTTAACATTATTTAAGAAACGTCATGCTTTATATGTACTGGGCATGG
TTCCAAGTGCTTTATAAATAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGATGAACCTACTTAAATAAAATCCAGTTTGTCCTCTATCAAAGTCTATCCCTGACT
CATTCAGATACAACCTGACTTTGCTAACCATGGTTGCAGAAGGAATTTTGGTTGAGGCTC
TTACAAGAGTAAATCCCTCTACAAGAAAAGAAAGAGAAAAGAAAATGTGAAATCCACAAA
CTTTTGTGAAAATCAAATATTTGGGGGGAATAGGCACAGGTGAGTCTGTTCATATAATGA
ATACAGTTGTCAACATAAGTAAGCTCTTTGAACTATGTAATTTCTAAGTTAATAATCGAT
CTCTCTTAGTCTATAGTTGACATTAACCTCAGTCAATCAGATGGATAGATAGGGTCCCCA
AGTCCAGAGACACAATGAAATCAAGGCTTCTGAAAATTAAATGTGATTTTAAAATATTTT
TATTGAAGTTAAACAGTGAGTTCCAAAAAGAGGTTAAATAGGTTATGAGAGAGAAAAGAT
GGGGAATAACCACTGTGTGCCAGAATTATTGCTGGATGTTTATTAATCTCAGGCAAAAAA
TTATTCCTAGAGAAACAACATCATCATCATCCCTGTTTATAGAGAAGAAAACCGAGGCTT
GGAAAAGTAGCTTGACCCAAGATTCAGAGTTTACAAGTACAAAACTCATGTACTGTGTTT
TATACCACACCACCTCTATAAAAGTGAGATCATTTTAAATAGTGGTTCTTTTTTGTTTAA
CTCAGTGAAAATGAATTTACAATAGAACCATTGCTTTGAACTCAATAAATATAAAATGTA
CTGTGCTAATCAAATTTGTGCATTTTCAGTGGGATTTCAAATTTTAGTCATAAGGCAATT
ATTTTCATTTCCCTGAATATATTTCTGGTACCTACAAGTGTGCAATAACATAATTTTTAA
ATTACTTGGAATTTTGAGAAAAATTAAAATATTATTTGTAAAATATGTAAATGGATGTAC
TCATATCCATTTATTTAACATTATTTAAGAAACGTCATGCTTTATATGTACTGGGCATGG
TTCCAAGTGCTTTATAAATAAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               929-1042, - strand, RNAz p=0.999555

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               929-1042, - strand, RNAz p=0.999555

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               929-1042, UMC-pd3ov3-011-d04 Oviduct gilt D3 of estrous cycle pd3ov Sus 
(gb|CO991051.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               929-1042, UMC-pd3ov3-011-d04 Oviduct gilt D3 of estrous cycle pd3ov Sus 
(gb|CO991051.1|), blast E-value=0, identity=100%

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-777, gnl|bosTau2|chr11 (81382984-81383732)
               

               
               1-777, gnl|Hg17|chr6 (108951264-108952123)
               


               
               778-1042, gnl|bosTau2|chr11 (81384949-81385216)
               

               
               778-1042, gnl|Hg17|chr6 (108953275-108953532)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-777, gnl|bosTau2|chr11 (81382984-81383732)
               

               
               1-777, gnl|Hg17|chr6 (108951264-108952123)
               


               
               778-1042, gnl|bosTau2|chr11 (81384949-81385216)
               

               
               778-1042, gnl|Hg17|chr6 (108953275-108953532)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

	1-777, gnl\|bosTau2\|chr11 (81382984-81383732)
	1-777, gnl\|Hg17\|chr6 (108951264-108952123)

	778-1042, gnl\|bosTau2\|chr11 (81384949-81385216)
	778-1042, gnl\|Hg17\|chr6 (108953275-108953532)