Non-Coding RNA Search

Ss1.1-Emb1-C0005217_P07.5

Sequence:


               
               ATAAGTTGGAAACACTAATTGTTAAAAGATGTAGCAAACCCTGTCAAACTTAGTACTTTA
TAGAGGAATGCATGCTTTCCATATTTTTTTTCTTACATAAACATCAGGTTAGGCAGCATA
AAGAATAGGACTTGTTTTTGTTTTTTGTTTTGTTGCACTGAAGTTTGACAAATAGTGTTA
TTGAGAGGGATGTGTAATTTTTCTCTACAGACAGGAGAAGAAATAACTGTCTTTTCATTT
GAGAGAGGCTAAAATGTTTTCAGCTAGGAACAAATCTTCCTGGTCGAAAGTTAGTAGGAT
ATGCCTGATCTTTGGCCTGATGACCAGTTTTAACTTAGAGCTGTTTTTATTTTGTCCTCC
CCAAGTTTGGTGACGTCTTTCCTGTTTTAATTTCAAGCTTCTTTGGGGGAGATGGGAAGG
TCATTTCCATGTGTGCATATTAATCCCGCGAAGTACAGGTACTTTGTCTCAGTAACATTG
GCAGCCAGTTAAATGTTTTGTAAACTTTAAAATATTAGGTCTAATGTATAGCAGAATTGG
AAAGCAGATAGAATTGGTTAACAAATGATTTTTTTTTTTAGTTTTTTTTTTCTTTTCGTT
TTTTTGATGTGTTGGGTTTTGGTTTTGAGTCTCTTTTTTTTTTTTTAATGAATGAAATTT
ACTGAGGAAAAAAATATGTGAAGGACCTTCACTCTAAGATGTTATATTTTTCTTAAAAAA
TAACTCCAAGTAGGGGTACCACTGAATCTGTACAGAGCCGTACAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAGTTGGAAACACTAATTGTTAAAAGATGTAGCAAACCCTGTCAAACTTAGTACTTTA
TAGAGGAATGCATGCTTTCCATATTTTTTTTCTTACATAAACATCAGGTTAGGCAGCATA
AAGAATAGGACTTGTTTTTGTTTTTTGTTTTGTTGCACTGAAGTTTGACAAATAGTGTTA
TTGAGAGGGATGTGTAATTTTTCTCTACAGACAGGAGAAGAAATAACTGTCTTTTCATTT
GAGAGAGGCTAAAATGTTTTCAGCTAGGAACAAATCTTCCTGGTCGAAAGTTAGTAGGAT
ATGCCTGATCTTTGGCCTGATGACCAGTTTTAACTTAGAGCTGTTTTTATTTTGTCCTCC
CCAAGTTTGGTGACGTCTTTCCTGTTTTAATTTCAAGCTTCTTTGGGGGAGATGGGAAGG
TCATTTCCATGTGTGCATATTAATCCCGCGAAGTACAGGTACTTTGTCTCAGTAACATTG
GCAGCCAGTTAAATGTTTTGTAAACTTTAAAATATTAGGTCTAATGTATAGCAGAATTGG
AAAGCAGATAGAATTGGTTAACAAATGATTTTTTTTTTTAGTTTTTTTTTTCTTTTCGTT
TTTTTGATGTGTTGGGTTTTGGTTTTGAGTCTCTTTTTTTTTTTTTAATGAATGAAATTT
ACTGAGGAAAAAAATATGTGAAGGACCTTCACTCTAAGATGTTATATTTTTCTTAAAAAA
TAACTCCAAGTAGGGGTACCACTGAATCTGTACAGAGCCGTACAAACC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               79-427, + strand, RNAz p=0.999628
               

               
               616-727, - strand, RNAz p=0.622473

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-427, + strand, RNAz p=0.999628
               

               
               616-727, - strand, RNAz p=0.622473

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               81-195, + strand, RNAmicro p=0.932531

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               81-195, + strand, RNAmicro p=0.932531

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               155-427, CJ465546 macaque brain cDNA library QnpA Macaca fascicularis cDNA 
(dbj|CJ465546.1|), blast E-value=0, identity=89.57% 
               

               
               155-427, CJ465566 macaque brain cDNA library QnpA Macaca fascicularis cDNA 
(dbj|CJ465566.1|), blast E-value=0, identity=89.57% 
               

               
               155-427, RC3-ST0186-240400-111-a08 ST0186 Homo sapiens cDNA, mRNA sequence 
(gb|AW813032.1|), blast E-value=0, identity=90.22% 
               

               
               155-427, AGENCOURT_6490613 NIH_MGC_125 Homo sapiens cDNA clone IMAGE 
(gb|BM544029.1|), blast E-value=0, identity=89.57% 
               

               
               155-427, LeukoS2_2_F04.g1_A024 Stimulated peripheral blood leukocytes S2 
(gb|CD469209.1|), blast E-value=0, identity=91.21% 
               

               
               158-353, LIB38533_003_D02_T7_1 LIB38533 Canis familiaris cDNA clone 
(gb|DN380786.1|), blast E-value=0, identity=95.92%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               155-427, CJ465546 macaque brain cDNA library QnpA Macaca fascicularis cDNA 
(dbj|CJ465546.1|), blast E-value=0, identity=89.57% 
               

               
               155-427, CJ465566 macaque brain cDNA library QnpA Macaca fascicularis cDNA 
(dbj|CJ465566.1|), blast E-value=0, identity=89.57% 
               

               
               155-427, RC3-ST0186-240400-111-a08 ST0186 Homo sapiens cDNA, mRNA sequence 
(gb|AW813032.1|), blast E-value=0, identity=90.22% 
               

               
               155-427, AGENCOURT_6490613 NIH_MGC_125 Homo sapiens cDNA clone IMAGE 
(gb|BM544029.1|), blast E-value=0, identity=89.57% 
               

               
               155-427, LeukoS2_2_F04.g1_A024 Stimulated peripheral blood leukocytes S2 
(gb|CD469209.1|), blast E-value=0, identity=91.21% 
               

               
               158-353, LIB38533_003_D02_T7_1 LIB38533 Canis familiaris cDNA clone 
(gb|DN380786.1|), blast E-value=0, identity=95.92%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of M67468, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of M67468, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chrX (10778798-10778023)
               

               
               1-768, gnl|Hg17|chrX (146736514-146737275)
               

               
               1-768, gnl|Mm7|chrX (64110868-64111632)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chrX (10778798-10778023)
               

               
               1-768, gnl|Hg17|chrX (146736514-146737275)
               

               
               1-768, gnl|Mm7|chrX (64110868-64111632)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fat (0.147427)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               spl (0.143184)

	79-427, + strand, RNAz p=0.999628
	616-727, - strand, RNAz p=0.622473

	155-427, CJ465546 macaque brain cDNA library QnpA Macaca fascicularis cDNA (dbj\|CJ465546.1\|), blast E-value=0, identity=89.57%
	155-427, CJ465566 macaque brain cDNA library QnpA Macaca fascicularis cDNA (dbj\|CJ465566.1\|), blast E-value=0, identity=89.57%
	155-427, RC3-ST0186-240400-111-a08 ST0186 Homo sapiens cDNA, mRNA sequence (gb\|AW813032.1\|), blast E-value=0, identity=90.22%
	155-427, AGENCOURT_6490613 NIH_MGC_125 Homo sapiens cDNA clone IMAGE (gb\|BM544029.1\|), blast E-value=0, identity=89.57%
	155-427, LeukoS2_2_F04.g1_A024 Stimulated peripheral blood leukocytes S2 (gb\|CD469209.1\|), blast E-value=0, identity=91.21%
	158-353, LIB38533_003_D02_T7_1 LIB38533 Canis familiaris cDNA clone (gb\|DN380786.1\|), blast E-value=0, identity=95.92%

	1-768, gnl\|bosTau2\|chrX (10778798-10778023)
	1-768, gnl\|Hg17\|chrX (146736514-146737275)
	1-768, gnl\|Mm7\|chrX (64110868-64111632)