Ss1.1-Emb1-C0005217_P07.5
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ATAAGTTGGAAACACTAATTGTTAAAAGATGTAGCAAACCCTGTCAAACTTAGTACTTTA
TAGAGGAATGCATGCTTTCCATATTTTTTTTCTTACATAAACATCAGGTTAGGCAGCATA
AAGAATAGGACTTGTTTTTGTTTTTTGTTTTGTTGCACTGAAGTTTGACAAATAGTGTTA
TTGAGAGGGATGTGTAATTTTTCTCTACAGACAGGAGAAGAAATAACTGTCTTTTCATTT
GAGAGAGGCTAAAATGTTTTCAGCTAGGAACAAATCTTCCTGGTCGAAAGTTAGTAGGAT
ATGCCTGATCTTTGGCCTGATGACCAGTTTTAACTTAGAGCTGTTTTTATTTTGTCCTCC
CCAAGTTTGGTGACGTCTTTCCTGTTTTAATTTCAAGCTTCTTTGGGGGAGATGGGAAGG
TCATTTCCATGTGTGCATATTAATCCCGCGAAGTACAGGTACTTTGTCTCAGTAACATTG
GCAGCCAGTTAAATGTTTTGTAAACTTTAAAATATTAGGTCTAATGTATAGCAGAATTGG
AAAGCAGATAGAATTGGTTAACAAATGATTTTTTTTTTTAGTTTTTTTTTTCTTTTCGTT
TTTTTGATGTGTTGGGTTTTGGTTTTGAGTCTCTTTTTTTTTTTTTAATGAATGAAATTT
ACTGAGGAAAAAAATATGTGAAGGACCTTCACTCTAAGATGTTATATTTTTCTTAAAAAA
TAACTCCAAGTAGGGGTACCACTGAATCTGTACAGAGCCGTACAAACC
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Blue-coloured subsequences are predicted RNA structures by RNAz
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ATAAGTTGGAAACACTAATTGTTAAAAGATGTAGCAAACCCTGTCAAACTTAGTACTTTA
TAGAGGAATGCATGCTTTCCATATTTTTTTTCTTACATAAACATCAGGTTAGGCAGCATA
AAGAATAGGACTTGTTTTTGTTTTTTGTTTTGTTGCACTGAAGTTTGACAAATAGTGTTA
TTGAGAGGGATGTGTAATTTTTCTCTACAGACAGGAGAAGAAATAACTGTCTTTTCATTT
GAGAGAGGCTAAAATGTTTTCAGCTAGGAACAAATCTTCCTGGTCGAAAGTTAGTAGGAT
ATGCCTGATCTTTGGCCTGATGACCAGTTTTAACTTAGAGCTGTTTTTATTTTGTCCTCC
CCAAGTTTGGTGACGTCTTTCCTGTTTTAATTTCAAGCTTCTTTGGGGGAGATGGGAAGG
TCATTTCCATGTGTGCATATTAATCCCGCGAAGTACAGGTACTTTGTCTCAGTAACATTG
GCAGCCAGTTAAATGTTTTGTAAACTTTAAAATATTAGGTCTAATGTATAGCAGAATTGG
AAAGCAGATAGAATTGGTTAACAAATGATTTTTTTTTTTAGTTTTTTTTTTCTTTTCGTT
TTTTTGATGTGTTGGGTTTTGGTTTTGAGTCTCTTTTTTTTTTTTTAATGAATGAAATTT
ACTGAGGAAAAAAATATGTGAAGGACCTTCACTCTAAGATGTTATATTTTTCTTAAAAAA
TAACTCCAAGTAGGGGTACCACTGAATCTGTACAGAGCCGTACAAACC
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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81-195, + strand, RNAmicro p=0.932531 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
81-195, + strand, RNAmicro p=0.932531 |
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155-427, CJ465546 macaque brain cDNA library QnpA Macaca fascicularis cDNA
(dbj|CJ465546.1|), blast E-value=0, identity=89.57% |
|
155-427, CJ465566 macaque brain cDNA library QnpA Macaca fascicularis cDNA
(dbj|CJ465566.1|), blast E-value=0, identity=89.57% |
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155-427, RC3-ST0186-240400-111-a08 ST0186 Homo sapiens cDNA, mRNA sequence
(gb|AW813032.1|), blast E-value=0, identity=90.22% |
|
155-427, AGENCOURT_6490613 NIH_MGC_125 Homo sapiens cDNA clone IMAGE
(gb|BM544029.1|), blast E-value=0, identity=89.57% |
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155-427, LeukoS2_2_F04.g1_A024 Stimulated peripheral blood leukocytes S2
(gb|CD469209.1|), blast E-value=0, identity=91.21% |
|
158-353, LIB38533_003_D02_T7_1 LIB38533 Canis familiaris cDNA clone
(gb|DN380786.1|), blast E-value=0, identity=95.92% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
155-427, CJ465546 macaque brain cDNA library QnpA Macaca fascicularis cDNA
(dbj|CJ465546.1|), blast E-value=0, identity=89.57% |
|
155-427, CJ465566 macaque brain cDNA library QnpA Macaca fascicularis cDNA
(dbj|CJ465566.1|), blast E-value=0, identity=89.57% |
|
155-427, RC3-ST0186-240400-111-a08 ST0186 Homo sapiens cDNA, mRNA sequence
(gb|AW813032.1|), blast E-value=0, identity=90.22% |
|
155-427, AGENCOURT_6490613 NIH_MGC_125 Homo sapiens cDNA clone IMAGE
(gb|BM544029.1|), blast E-value=0, identity=89.57% |
|
155-427, LeukoS2_2_F04.g1_A024 Stimulated peripheral blood leukocytes S2
(gb|CD469209.1|), blast E-value=0, identity=91.21% |
|
158-353, LIB38533_003_D02_T7_1 LIB38533 Canis familiaris cDNA clone
(gb|DN380786.1|), blast E-value=0, identity=95.92% |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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fat (0.147427) |
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spl (0.143184) |
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fat (0.147427) |
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spl (0.143184) |