Non-Coding RNA Search

Ss1.1-Emb1-C0005218_A07.5

Sequence:


               
               CTGACACAACTATATGATAAAGGCTATACTCCAAAAGAACAGAAGGACTGTGTAGGCATC
TTCTGTGAACAGCAAAGCAATGATACCTTCCATTCGTTCATTGGCACTTGCTTTGCTTTG
TTTGGGTATATTTTCTCCCTAGCACATGTGGCAATCTTTGTCACAAGATTTAGCTATGGA
GAAGAATTACAGTCCTTTGTTGGAGCCGTTATTGTGGGGACATACAATGTCGTGGTTGTG
ATTGTACTTACCAAGCTGCTGGTGGCAATGCTTCATAAAAGTTTTCAGTTGATAGCAAAT
CATGAAGACAAAGAATGGAAGTTTGCTCGAGCAAAGTTATGGCTTAGCTACTTTGATGAC
AAATGTACATTGCCCCCACCTTTCAACATCATTCCTTCACCAAAGACTATCTGCTATATG
ATTAGTAGCCTTAGTAAATGGATTTGCTCTCATACATCCAAAGGCAAGGTTAAACGGCAG
AACAGCTTGAAGGAATGGAGAAATTTGAAACAAAAGAGAGATGAAAACTACCAAAAAGTG
ATGTGCTGTTTAGTGCATCGTTACTTGACTTCCATGAGACAAAAGATGCAAAGTACAGAT
CAGGCAACTGTGGAAAATCTAAATGAACTGCGCCAAGACCTGTCAAAATTCCGAAATGAA
ATAAGAGATTTACTTGGCTTTCGGACTTCTAAATATGCTATGTTTTACCCAAGAAATTAG
CCATTTTCTAAATCATGTAGAGAATAATTTTCAATAACAAATCTGAGAGACTGCATTTGC
ATAACTTGCAATTAAATTAATAAGATATATATTGAAATAAAGAATTATGTAAAAGCCATT
CTTTAAAATATTTATAGCATAAATATGTATAATATGTACATAGAATTAGTTTTTTAAAAA
CCCTCTGATAGTGGCTTTTTGCAAGTGTAAAACAGATTAAGTGGATAGATTATGTTAGCA
TGCTGCTTAGTTTTCTTATTTAAATAGTGCTTAAAATTTTTTGCTCCTTATGTTTAGGAA
CAGCAATTAGAAGTGTACTAACTATTGCCAGAAGGTTTTATAAAAATGAAGATCAGCAAA
TGTGGAGTGATCTCCTTCCATAGGATACACTTGAGATATAGGAGTCATATTTTTTAAAAT
CTTTGTTTTAGGAGTTTACATATAGTGTGGTATTTATTGTTTAGGAATATAAGTTTACCT
AAAACAGTAATCTATTTTTTCTTTTTGTATAATCTTTAAGCAACAAATATAAACCCCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACACAACTATATGATAAAGGCTATACTCCAAAAGAACAGAAGGACTGTGTAGGCATC
TTCTGTGAACAGCAAAGCAATGATACCTTCCATTCGTTCATTGGCACTTGCTTTGCTTTG
TTTGGGTATATTTTCTCCCTAGCACATGTGGCAATCTTTGTCACAAGATTTAGCTATGGA
GAAGAATTACAGTCCTTTGTTGGAGCCGTTATTGTGGGGACATACAATGTCGTGGTTGTG
ATTGTACTTACCAAGCTGCTGGTGGCAATGCTTCATAAAAGTTTTCAGTTGATAGCAAAT
CATGAAGACAAAGAATGGAAGTTTGCTCGAGCAAAGTTATGGCTTAGCTACTTTGATGAC
AAATGTACATTGCCCCCACCTTTCAACATCATTCCTTCACCAAAGACTATCTGCTATATG
ATTAGTAGCCTTAGTAAATGGATTTGCTCTCATACATCCAAAGGCAAGGTTAAACGGCAG
AACAGCTTGAAGGAATGGAGAAATTTGAAACAAAAGAGAGATGAAAACTACCAAAAAGTG
ATGTGCTGTTTAGTGCATCGTTACTTGACTTCCATGAGACAAAAGATGCAAAGTACAGAT
CAGGCAACTGTGGAAAATCTAAATGAACTGCGCCAAGACCTGTCAAAATTCCGAAATGAA
ATAAGAGATTTACTTGGCTTTCGGACTTCTAAATATGCTATGTTTTACCCAAGAAATTAG
CCATTTTCTAAATCATGTAGAGAATAATTTTCAATAACAAATCTGAGAGACTGCATTTGC
ATAACTTGCAATTAAATTAATAAGATATATATTGAAATAAAGAATTATGTAAAAGCCATT
CTTTAAAATATTTATAGCATAAATATGTATAATATGTACATAGAATTAGTTTTTTAAAAA
CCCTCTGATAGTGGCTTTTTGCAAGTGTAAAACAGATTAAGTGGATAGATTATGTTAGCA
TGCTGCTTAGTTTTCTTATTTAAATAGTGCTTAAAATTTTTTGCTCCTTATGTTTAGGAA
CAGCAATTAGAAGTGTACTAACTATTGCCAGAAGGTTTTATAAAAATGAAGATCAGCAAA
TGTGGAGTGATCTCCTTCCATAGGATACACTTGAGATATAGGAGTCATATTTTTTAAAAT
CTTTGTTTTAGGAGTTTACATATAGTGTGGTATTTATTGTTTAGGAATATAAGTTTACCT
AAAACAGTAATCTATTTTTTCTTTTTGTATAATCTTTAAGCAACAAATATAAACCCCTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q91869_XENLA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q91869_XENLA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               96-214, - strand, RNAz p=0.868745

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-214, - strand, RNAz p=0.868745

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               96-297, gnl|bosTau2|chr1 (80554817-80554616)
               

               
               96-297, gnl|Hg17|chr3 (144005517-144005718)
               

               
               96-297, gnl|Mm7|chr9 (95354676-95354475)
               


               
               487-1260, gnl|bosTau2|chr1 (80553110-80552339)
               

               
               487-1260, gnl|Hg17|chr3 (144007542-144008318)
               

               
               487-1260, gnl|Mm7|chr9 (95352802-95352069)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-297, gnl|bosTau2|chr1 (80554817-80554616)
               

               
               96-297, gnl|Hg17|chr3 (144005517-144005718)
               

               
               96-297, gnl|Mm7|chr9 (95354676-95354475)
               


               
               487-1260, gnl|bosTau2|chr1 (80553110-80552339)
               

               
               487-1260, gnl|Hg17|chr3 (144007542-144008318)
               

               
               487-1260, gnl|Mm7|chr9 (95352802-95352069)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	96-297, gnl\|bosTau2\|chr1 (80554817-80554616)
	96-297, gnl\|Hg17\|chr3 (144005517-144005718)
	96-297, gnl\|Mm7\|chr9 (95354676-95354475)

	487-1260, gnl\|bosTau2\|chr1 (80553110-80552339)
	487-1260, gnl\|Hg17\|chr3 (144007542-144008318)
	487-1260, gnl\|Mm7\|chr9 (95352802-95352069)