Non-Coding RNA Search

Ss1.1-Emb1-C0005218_B17.5

Sequence:


               
               AAGCTTCATTTGGATGGGCATTTTTGTCCATCTTGTGCGGCTTCAGATCCCGGGTTTTGG
CCTTTCTGGGACCCCGGTCCGCCTTCAGTTCACTTTTGGGTTCGGGAGGAGCCCGGTAAT
GCTGGCCATGGCAGCAGGTCCCGGAGCGATCACTGATGCGAGCCCTGTATCTGGAGCTGG
AGAGGAGGAAGGTAAATATGTCAAACCTTTTACACCAGAGAAAGCAAAAGAACTTATAAT
GTCTTTACAACAGCCTGCAGTCTTCTGTAACATGGTTTTTGATTGGCCAGCACAGCACTG
GACTGCGAAACATCTCTCAGAGGTCCTGCAAGGCAAGCAGATTCGATTCAGGATGGGAAT
GAAAAGCACAGGTACAGCGCCTCAGTTTGAAACCACGTGTAGTTACATAGAAGCGACACT
TGAAGAGTTTCTGACCTGGAACTGTGACCAGTCTACTACCTCTGAACCATTTAGAGACTA
TGATCATTCCAAATTCTGGGCTTATGCTGACTATAAATATTTTGTCAGTCTGTTTGAAGA
CAAGACAGATATTTTCCAGGACGTGAAATGGTCTGACTTCGGGTTTCCTGGAAGAAATGG
ACAGCAAAGTACATTGTGGATCGGCTCCATGGGGGCCCATACACCCTGTCATTTGGACAC
CTATGGTTGCAACCTAGTATTCCAGGTACAAGGAAGGTAATGCGCATGTGCGTGTGCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCTTCATTTGGATGGGCATTTTTGTCCATCTTGTGCGGCTTCAGATCCCGGGTTTTGG
CCTTTCTGGGACCCCGGTCCGCCTTCAGTTCACTTTTGGGTTCGGGAGGAGCCCGGTAAT
GCTGGCCATGGCAGCAGGTCCCGGAGCGATCACTGATGCGAGCCCTGTATCTGGAGCTGG
AGAGGAGGAAGGTAAATATGTCAAACCTTTTACACCAGAGAAAGCAAAAGAACTTATAAT
GTCTTTACAACAGCCTGCAGTCTTCTGTAACATGGTTTTTGATTGGCCAGCACAGCACTG
GACTGCGAAACATCTCTCAGAGGTCCTGCAAGGCAAGCAGATTCGATTCAGGATGGGAAT
GAAAAGCACAGGTACAGCGCCTCAGTTTGAAACCACGTGTAGTTACATAGAAGCGACACT
TGAAGAGTTTCTGACCTGGAACTGTGACCAGTCTACTACCTCTGAACCATTTAGAGACTA
TGATCATTCCAAATTCTGGGCTTATGCTGACTATAAATATTTTGTCAGTCTGTTTGAAGA
CAAGACAGATATTTTCCAGGACGTGAAATGGTCTGACTTCGGGTTTCCTGGAAGAAATGG
ACAGCAAAGTACATTGTGGATCGGCTCCATGGGGGCCCATACACCCTGTCATTTGGACAC
CTATGGTTGCAACCTAGTATTCCAGGTACAAGGAAGGTAATGCGCATGTGCGTGTGCATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|39645805|gb|AAH63629.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|39645805|gb|AAH63629.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               40-194, gnl|bosTau2|chr1 (39177736-39177885)
               

               
               40-194, gnl|canFam2|chr33 (28909030-28909480)
               

               
               40-194, gnl|dasNov1|scaffold_121264 (3160-3625)
               

               
               40-194, gnl|echTel1|scaffold_290593 (517-965)
               

               
               40-194, gnl|hg17|chr3 (123994994-123995475)
               

               
               40-194, gnl|Hg17|chr3 (123995330-123995151)
               

               
               40-194, gnl|loxAfr1|scaffold_135140 (4674-5151)
               

               
               40-194, gnl|mm7|chr16 (35444876-35444493)
               

               
               40-194, gnl|oryCun1|scaffold_124332 (131-526)
               

               
               40-194, gnl|panTro1|chr2 (125683150-125683631)
               

               
               40-194, gnl|rheMac2|chr2 (42776277-42776759)
               

               
               40-194, gnl|rn3|chr11 (66886136-66886519)
               


               
               375-560, gnl|bosTau2|chr1 (39209286-39209471)
               

               
               375-560, gnl|Hg17|chr3 (123970422-123970237)
               

               
               375-560, gnl|Mm7|chr16 (35475747-35475932)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-194, gnl|bosTau2|chr1 (39177736-39177885)
               

               
               40-194, gnl|canFam2|chr33 (28909030-28909480)
               

               
               40-194, gnl|dasNov1|scaffold_121264 (3160-3625)
               

               
               40-194, gnl|echTel1|scaffold_290593 (517-965)
               

               
               40-194, gnl|hg17|chr3 (123994994-123995475)
               

               
               40-194, gnl|Hg17|chr3 (123995330-123995151)
               

               
               40-194, gnl|loxAfr1|scaffold_135140 (4674-5151)
               

               
               40-194, gnl|mm7|chr16 (35444876-35444493)
               

               
               40-194, gnl|oryCun1|scaffold_124332 (131-526)
               

               
               40-194, gnl|panTro1|chr2 (125683150-125683631)
               

               
               40-194, gnl|rheMac2|chr2 (42776277-42776759)
               

               
               40-194, gnl|rn3|chr11 (66886136-66886519)
               


               
               375-560, gnl|bosTau2|chr1 (39209286-39209471)
               

               
               375-560, gnl|Hg17|chr3 (123970422-123970237)
               

               
               375-560, gnl|Mm7|chr16 (35475747-35475932)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	40-194, gnl\|bosTau2\|chr1 (39177736-39177885)
	40-194, gnl\|canFam2\|chr33 (28909030-28909480)
	40-194, gnl\|dasNov1\|scaffold_121264 (3160-3625)
	40-194, gnl\|echTel1\|scaffold_290593 (517-965)
	40-194, gnl\|hg17\|chr3 (123994994-123995475)
	40-194, gnl\|Hg17\|chr3 (123995330-123995151)
	40-194, gnl\|loxAfr1\|scaffold_135140 (4674-5151)
	40-194, gnl\|mm7\|chr16 (35444876-35444493)
	40-194, gnl\|oryCun1\|scaffold_124332 (131-526)
	40-194, gnl\|panTro1\|chr2 (125683150-125683631)
	40-194, gnl\|rheMac2\|chr2 (42776277-42776759)
	40-194, gnl\|rn3\|chr11 (66886136-66886519)

	375-560, gnl\|bosTau2\|chr1 (39209286-39209471)
	375-560, gnl\|Hg17\|chr3 (123970422-123970237)
	375-560, gnl\|Mm7\|chr16 (35475747-35475932)