Non-Coding RNA Search

Ss1.1-Emb1-C0005218_G21.5

Sequence:


               
               CTGTGTGTATGTGTGTATATATACATAGATACATACACATAGAAAATATAGCCTGTCACT
ATGTGACACAGGTTGCATATTTGGGATCATAGTAAGGGCTGGTGAGCTGGGGGAATAGTT
TGGATGTTTAATGACTACTTGTCTTTTAATTAATGCACACTTTGCCGTTCTATGTGCATA
ATGGCACAAGAGTTTGATACTTAGTAGTTTGACAAACTGAGATGCTTGCTGTTGAGTTCC
AGACTGGGGAAATAGCCCAGTATAGGGGAATTAAGACTGTCAAGGCTGGCTAGGTTTGAA
TCATTACTCTCTTTTGTTTAATGGAGACTTAAAAACTTTCAAACTTCTGGTTTGGGAGTT
TAGATAGGTTTGTCTTTGGATATGTAAATAGTTGACTGCTAAATTTGGTCAGATTTCTCC
TGACTGACAGACTGTTCCTAAATTCTTAGGATACGTCCTGGTAAATTACACTTTGTGAAT
TCATTGTCATATGTGTAATTATTGCGTTTTTGGATGTACCTAGTTTGATAATTTTTAAAA
AATATTTCCGTTTAAGGTATCTGTTTGCAGGTCAGAAAATGAAAAAATGTAATTGTGTAA
TGCTCTGAAATGTAAAAAAAAAAAAAAGCTGTAAATAAAATCGACTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGTGTATGTGTGTATATATACATAGATACATACACATAGAAAATATAGCCTGTCACT
ATGTGACACAGGTTGCATATTTGGGATCATAGTAAGGGCTGGTGAGCTGGGGGAATAGTT
TGGATGTTTAATGACTACTTGTCTTTTAATTAATGCACACTTTGCCGTTCTATGTGCATA
ATGGCACAAGAGTTTGATACTTAGTAGTTTGACAAACTGAGATGCTTGCTGTTGAGTTCC
AGACTGGGGAAATAGCCCAGTATAGGGGAATTAAGACTGTCAAGGCTGGCTAGGTTTGAA
TCATTACTCTCTTTTGTTTAATGGAGACTTAAAAACTTTCAAACTTCTGGTTTGGGAGTT
TAGATAGGTTTGTCTTTGGATATGTAAATAGTTGACTGCTAAATTTGGTCAGATTTCTCC
TGACTGACAGACTGTTCCTAAATTCTTAGGATACGTCCTGGTAAATTACACTTTGTGAAT
TCATTGTCATATGTGTAATTATTGCGTTTTTGGATGTACCTAGTTTGATAATTTTTAAAA
AATATTTCCGTTTAAGGTATCTGTTTGCAGGTCAGAAAATGAAAAAATGTAATTGTGTAA
TGCTCTGAAATGTAAAAAAAAAAAAAAGCTGTAAATAAAATCGACTAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-120, - strand, RNAz p=0.999141
               

               
               331-526, + strand, RNAz p=0.971341

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-120, - strand, RNAz p=0.999141
               

               
               331-526, + strand, RNAz p=0.971341

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               481-559, + strand, RNAmicro p=0.999291

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               481-559, + strand, RNAmicro p=0.999291

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK055921, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK055921, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-626, gnl|bosTau2|chr7 (48584079-48584696)
               

               
               4-626, gnl|Hg17|chr5 (159451583-159450966)
               

               
               4-626, gnl|Mm7|chr11 (43663289-43663917)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-626, gnl|bosTau2|chr7 (48584079-48584696)
               

               
               4-626, gnl|Hg17|chr5 (159451583-159450966)
               

               
               4-626, gnl|Mm7|chr11 (43663289-43663917)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               rec (0.17307)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)

	4-120, - strand, RNAz p=0.999141
	331-526, + strand, RNAz p=0.971341

	4-626, gnl\|bosTau2\|chr7 (48584079-48584696)
	4-626, gnl\|Hg17\|chr5 (159451583-159450966)
	4-626, gnl\|Mm7\|chr11 (43663289-43663917)