Non-Coding RNA Search

Ss1.1-Emb1-C0005218_M09.5

Sequence:


               
               CAACTGCGTGTCGGAAGACTCTCTCTGCCTCCTTACCTTAACTTAAAGCGAGCACTAAGA
TAAGACCTTCAGGAGACTTGAAACCAGAAAGACCTGCTTAATGACTACTATAAATGCACT
GAAACAATGTTTATGGAGATGTCAACTCTTTTTAAGACAGTTTTCATGTTGAATTTGGTA
TTTGGAAAGGTTATTTTTAATGTATTTCGGTAATACATTTGTTACTACATTTACGTGTAC
AGTGTTACAGTATGTATGTATTGTGAACTTTAAAAGACTATTTTGATACATTTATAAATA
TATAAAATTATGTAAAAATGAGACTCTATTTTGACTTAGATTTTCTTGCTGTTTGCTACC
AAAATTTGTATTTTGAATCTGTTAAGTATGGTTTTATGTACAATGAATAAGTAATTCCTC
TTTATTAAGGAAAAGTAAGGGAGACCGTTTTTAGAACGTGCTTTTCATGTTCCCACTCTG
AAGATGGCAGATCCGTTCATTCTTTTGGGAAGTCAGTGTAACTTACCAAGTTTATCCAAG
TTTATGGCCGGGGAGAGTGTAGTCTTCTGAGGTGGCTTCTTTAGGCCATGTCCTTTCCCT
TTGTTTTTGTTGCTGAGCCATTTGGTTTTGCATCTTTGGGGGCTTTCACAAAATTTAACA
TCCAGCTGCAGATCAGAAGTCACTGAATATTTTTTTCTCTGTGAAAGCACGATGTTTCTC
TATGAAATGACTCAAGAGTCCAAATGCTTTTCTTTCTTTCCTCCTCTCAGAAGAAATTCT
TAACCCATTTAGAATATTCAGATTTTGGTACGAGGTTTTTGCCTGTATTCACACGTGGTC
TGGCACCAGTTTTCAATCAAGGAAGAGGACAAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTGCGTGTCGGAAGACTCTCTCTGCCTCCTTACCTTAACTTAAAGCGAGCACTAAGA
TAAGACCTTCAGGAGACTTGAAACCAGAAAGACCTGCTTAATGACTACTATAAATGCACT
GAAACAATGTTTATGGAGATGTCAACTCTTTTTAAGACAGTTTTCATGTTGAATTTGGTA
TTTGGAAAGGTTATTTTTAATGTATTTCGGTAATACATTTGTTACTACATTTACGTGTAC
AGTGTTACAGTATGTATGTATTGTGAACTTTAAAAGACTATTTTGATACATTTATAAATA
TATAAAATTATGTAAAAATGAGACTCTATTTTGACTTAGATTTTCTTGCTGTTTGCTACC
AAAATTTGTATTTTGAATCTGTTAAGTATGGTTTTATGTACAATGAATAAGTAATTCCTC
TTTATTAAGGAAAAGTAAGGGAGACCGTTTTTAGAACGTGCTTTTCATGTTCCCACTCTG
AAGATGGCAGATCCGTTCATTCTTTTGGGAAGTCAGTGTAACTTACCAAGTTTATCCAAG
TTTATGGCCGGGGAGAGTGTAGTCTTCTGAGGTGGCTTCTTTAGGCCATGTCCTTTCCCT
TTGTTTTTGTTGCTGAGCCATTTGGTTTTGCATCTTTGGGGGCTTTCACAAAATTTAACA
TCCAGCTGCAGATCAGAAGTCACTGAATATTTTTTTCTCTGTGAAAGCACGATGTTTCTC
TATGAAATGACTCAAGAGTCCAAATGCTTTTCTTTCTTTCCTCCTCTCAGAAGAAATTCT
TAACCCATTTAGAATATTCAGATTTTGGTACGAGGTTTTTGCCTGTATTCACACGTGGTC
TGGCACCAGTTTTCAATCAAGGAAGAGGACAAAATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               160-277, + strand, RNAz p=0.772621

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-277, + strand, RNAz p=0.772621

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-869, gnl|bosTau2|chr3 (38836801-38835944)
               

               
               1-869, gnl|Hg17|chr1 (100695935-100696818)
               

               
               1-869, gnl|Mm7|chr3 (116048802-116047781)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-869, gnl|bosTau2|chr3 (38836801-38835944)
               

               
               1-869, gnl|Hg17|chr1 (100695935-100696818)
               

               
               1-869, gnl|Mm7|chr3 (116048802-116047781)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nmm (0.265604)
               

               
               lun (0.150489)
               

               
               spl (0.143184)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               lun (0.150489)
               

               
               spl (0.143184)

	1-869, gnl\|bosTau2\|chr3 (38836801-38835944)
	1-869, gnl\|Hg17\|chr1 (100695935-100696818)
	1-869, gnl\|Mm7\|chr3 (116048802-116047781)