Non-Coding RNA Search

Ss1.1-Emb1-C0005218_O03.5

Sequence:


               
               CTTGCCAGTAGCCTCAGTCCGTACCGTGAAGGGAGATTTATAGAGAGGCGACTGCGCTCC
TCATCAGAAGGAACTGCAGGGAGTAGCAGGATGATTTTGAAACCAAGAGATGGAAATGTT
GAGGAAGTTAACAGTCTAAGAAAGCAAAGAGCGGGTTCGTCATCTTCAAAAATGAACAGC
ATGGATGTCTTGAATAATTTGGGATCTTGTGAACTGGATGAAGATGACCTGATGCTTGAT
TTAGAATTTTTAGAGGAACAGAGCCTTCGTCCTTCAGTTTGCCGAGAAGATTCGTACCAC
TCTGTGGTCTCATGTGCTGCTGTAGTTCTCACTCCTGTGGAACCAACAATAGAAATGAAG
AAAAGAGAAGAACTAAAACTTTCTGAACCTTCCAAACAGAACCTTTCCCTGAAATTAACA
AAAGACACTGATCAGGAAGCCAGGTGTCCCCATATCAGCCGAATGCCCAGCAGTCCCTCT
GCAGACTGGCCCCTGCCAGGTGTAGAAGAAAATGGAGGCATGGATTCTCTGCCATTCAGG
CTGATGTTACAGGACTGCACAGCTGTCAAGACATTACTACTGAAGATGAAGAGAGTTCTC
CAAGAGAGTGCAGATATGAGCCCAACAAGTAGCACCACTTCACTTCCTGTTAGTCCTCTT
ACTGAAGAGCCATTGCCTTTCAAGGATATAATGAAAGATGAATGCTCAATGCTGAAGCTG
CAGCTGAAAGAGAAGGATGAACTCATTTCCCAACTACAGGAAGAACTGGAAAAAGTTCAG
CATTTACAGAAGGCTTTTGCTTCAAGAGTAGATAAATCCACACAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCCAGTAGCCTCAGTCCGTACCGTGAAGGGAGATTTATAGAGAGGCGACTGCGCTCC
TCATCAGAAGGAACTGCAGGGAGTAGCAGGATGATTTTGAAACCAAGAGATGGAAATGTT
GAGGAAGTTAACAGTCTAAGAAAGCAAAGAGCGGGTTCGTCATCTTCAAAAATGAACAGC
ATGGATGTCTTGAATAATTTGGGATCTTGTGAACTGGATGAAGATGACCTGATGCTTGAT
TTAGAATTTTTAGAGGAACAGAGCCTTCGTCCTTCAGTTTGCCGAGAAGATTCGTACCAC
TCTGTGGTCTCATGTGCTGCTGTAGTTCTCACTCCTGTGGAACCAACAATAGAAATGAAG
AAAAGAGAAGAACTAAAACTTTCTGAACCTTCCAAACAGAACCTTTCCCTGAAATTAACA
AAAGACACTGATCAGGAAGCCAGGTGTCCCCATATCAGCCGAATGCCCAGCAGTCCCTCT
GCAGACTGGCCCCTGCCAGGTGTAGAAGAAAATGGAGGCATGGATTCTCTGCCATTCAGG
CTGATGTTACAGGACTGCACAGCTGTCAAGACATTACTACTGAAGATGAAGAGAGTTCTC
CAAGAGAGTGCAGATATGAGCCCAACAAGTAGCACCACTTCACTTCCTGTTAGTCCTCTT
ACTGAAGAGCCATTGCCTTTCAAGGATATAATGAAAGATGAATGCTCAATGCTGAAGCTG
CAGCTGAAAGAGAAGGATGAACTCATTTCCCAACTACAGGAAGAACTGGAAAAAGTTCAG
CATTTACAGAAGGCTTTTGCTTCAAGAGTAGATAAATCCACACAAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26339474|dbj|BAC33408.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26339474|dbj|BAC33408.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               709-828, - strand, RNAz p=0.793224

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               709-828, - strand, RNAz p=0.793224

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               683-828, gnl|bosTau2|chr9 (28020134-28020279)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               683-828, gnl|bosTau2|chr9 (28020134-28020279)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)