Non-Coding RNA Search

Ss1.1-Emb2-UMC-pd12con-016-b05.3

Sequence:


               
               TCAGCTACAATTCTTTGCAGCTTTTTGCTTTCTTGAAGAAATTATAATCCAGGAACAGGG
TTCACGTTCAGGTTTGAAGCACTTTTATAACACTGAGAAGTGCCTTTTTGGAGAAGAGTG
ACTTTCAACAGTTTGCTAGCTTGACAACCCTGCCAGTTCAGTTTCTGGGCAGATTCCATG
TGTCGTCGCTCCCTCCCCCGGTTTTGGCATGAATCAAATGGTTTGGTAGAGGTGGAATCT
TAAGTGTGTTTGTGTGTTCATGTTGCTTTGCATGTGCAGCCCGTAGCTATGCCTGATTAG
TGTCTGGGGCATAATTGGACCTTGAATCAATAAATGTAAATAGAGCTTTTGATCTGTTAT
GCTTTTTATACAAAAGTTTTTTATTTTAATAATAAAATGTTTTGTTATAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCTACAATTCTTTGCAGCTTTTTGCTTTCTTGAAGAAATTATAATCCAGGAACAGGG
TTCACGTTCAGGTTTGAAGCACTTTTATAACACTGAGAAGTGCCTTTTTGGAGAAGAGTG
ACTTTCAACAGTTTGCTAGCTTGACAACCCTGCCAGTTCAGTTTCTGGGCAGATTCCATG
TGTCGTCGCTCCCTCCCCCGGTTTTGGCATGAATCAAATGGTTTGGTAGAGGTGGAATCT
TAAGTGTGTTTGTGTGTTCATGTTGCTTTGCATGTGCAGCCCGTAGCTATGCCTGATTAG
TGTCTGGGGCATAATTGGACCTTGAATCAATAAATGTAAATAGAGCTTTTGATCTGTTAT
GCTTTTTATACAAAAGTTTTTTATTTTAATAATAAAATGTTTTGTTATAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-197, + strand, RNAz p=0.611681

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, + strand, RNAz p=0.611681

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_145810, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_145810, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-409, gnl|bosTau2|chr2 (15297216-15296812)
               

               
               1-409, gnl|Hg17|chr2 (174058754-174059138)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-409, gnl|bosTau2|chr2 (15297216-15296812)
               

               
               1-409, gnl|Hg17|chr2 (174058754-174059138)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               thg (0.126791)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)
               

               
               nbm (0.0993246)

	1-409, gnl\|bosTau2\|chr2 (15297216-15296812)
	1-409, gnl\|Hg17\|chr2 (174058754-174059138)