Non-Coding RNA Search

Ss1.1-Emb3-MARC_8047.5

Sequence:


               
               GAGAATTCGGCGAGATGCAAATGAACAAATGGTTCTTGCTCATGTGACCAACAGGCTGTA
CACACTAGTATCTACTCTGACTGTTCAGATTTTCAAAGATGATTGGATCAGGCCTGCATT
ACTGTCTGGGCCTGTTGCAGCCAATGTTCTCAACTTTTCAGATCATCATATAATCCCAAT
GCCTCCTTCAAAGTGTGCTGATGATTCAAACCCTGTCACATCGACTCCAGCTAAACCTAG
TAGTCCACCTCCAGAATTTTCATTTAACACCCCTGGGAAAAACGTGAGCCCAGTTATTCT
TCTAAATACACAAACAAGGCCTTATGGTTTGGGTCTTAATCATGGACACACACCTTATAG
CAATATGCTTAATCAAGGACTTGGAATTCCAGGAATTGGAGCAACCCAAGGATTCAGGAC
TGGTTTTACAAATATACCAAGTAGATATGGAACAAACAATAGAATTGGGCAACCAAGATC
ATAATGTACTGTAATTTAATTTATTTTTTGAAGAATATTGACTCCTTGACTTCCAGTTTC
TTTAGTAATCCAACATTGCATCGACTGTTCAATTGTTTACTCTGAATGTTAGAGAATTAT
AGACTTGTTCACATTTCATGAAACCAATGAAGCTATATTTTGGTAAAATGTATTTGGGTC
AGTGAGAACCTTCTAAATGTTATAGGCTTTAAATAGGCTTCCTCTAGAGAGCATGTTTTT
CTAAATTTGAATTTTGCCGTCTTTGGTTTTGTAGTTGACTGCAGTGTGATATAACATTAC
CTTTATAAATGAGAGCCACTTGATGGAGTGGATCTTTCACATTATTAAAATATAATACTT
CAGCGAAATTTATAAACTTGCTTCTTGGGTACACATTTTAGGAAAGGAAAAAAATGTCCA
TTCTGAAAGTAAAAGTCTTTTTTATAGATTTTCCAAACTTAATTGCTACATTTTTCTTTG
AAGTCTTTCTGAATTATGTCTTTCAATGTAAAAGCAAAAATTTTTATCCGAAATTTTAGA
ACATATTCTACTCTTTGGCATAATTAAAAATTTTTAATTATCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAATTCGGCGAGATGCAAATGAACAAATGGTTCTTGCTCATGTGACCAACAGGCTGTA
CACACTAGTATCTACTCTGACTGTTCAGATTTTCAAAGATGATTGGATCAGGCCTGCATT
ACTGTCTGGGCCTGTTGCAGCCAATGTTCTCAACTTTTCAGATCATCATATAATCCCAAT
GCCTCCTTCAAAGTGTGCTGATGATTCAAACCCTGTCACATCGACTCCAGCTAAACCTAG
TAGTCCACCTCCAGAATTTTCATTTAACACCCCTGGGAAAAACGTGAGCCCAGTTATTCT
TCTAAATACACAAACAAGGCCTTATGGTTTGGGTCTTAATCATGGACACACACCTTATAG
CAATATGCTTAATCAAGGACTTGGAATTCCAGGAATTGGAGCAACCCAAGGATTCAGGAC
TGGTTTTACAAATATACCAAGTAGATATGGAACAAACAATAGAATTGGGCAACCAAGATC
ATAATGTACTGTAATTTAATTTATTTTTTGAAGAATATTGACTCCTTGACTTCCAGTTTC
TTTAGTAATCCAACATTGCATCGACTGTTCAATTGTTTACTCTGAATGTTAGAGAATTAT
AGACTTGTTCACATTTCATGAAACCAATGAAGCTATATTTTGGTAAAATGTATTTGGGTC
AGTGAGAACCTTCTAAATGTTATAGGCTTTAAATAGGCTTCCTCTAGAGAGCATGTTTTT
CTAAATTTGAATTTTGCCGTCTTTGGTTTTGTAGTTGACTGCAGTGTGATATAACATTAC
CTTTATAAATGAGAGCCACTTGATGGAGTGGATCTTTCACATTATTAAAATATAATACTT
CAGCGAAATTTATAAACTTGCTTCTTGGGTACACATTTTAGGAAAGGAAAAAAATGTCCA
TTCTGAAAGTAAAAGTCTTTTTTATAGATTTTCCAAACTTAATTGCTACATTTTTCTTTG
AAGTCTTTCTGAATTATGTCTTTCAATGTAAAAGCAAAAATTTTTATCCGAAATTTTAGA
ACATATTCTACTCTTTGGCATAATTAAAAATTTTTAATTATCAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61847321|ref|XP_599079.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61847321|ref|XP_599079.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, - strand, RNAz p=0.5374

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.5374

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1063, gnl|bosTau2|chr11 (12506422-12507480)
               

               
               1-1063, gnl|Hg17|chr2 (32356950-32358409)
               

               
               1-1063, gnl|Mm7|chr17 (72712898-72713921)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1063, gnl|bosTau2|chr11 (12506422-12507480)
               

               
               1-1063, gnl|Hg17|chr2 (32356950-32358409)
               

               
               1-1063, gnl|Mm7|chr17 (72712898-72713921)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               kid (0.259471)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)

	1-1063, gnl\|bosTau2\|chr11 (12506422-12507480)
	1-1063, gnl\|Hg17\|chr2 (32356950-32358409)
	1-1063, gnl\|Mm7\|chr17 (72712898-72713921)

	kid (0.259471)
	tes (0.207814)
	aor (0.195274)
	mga (0.160205)
	fco (0.157208)
	lin (0.145603)
	lyg (0.133103)
	sug (0.127291)