Non-Coding RNA Search

Ss1.1-End1-UMC-pd10en3-017-c08.3

Sequence:


               
               GAGAACTGCTTTTATTTTTTGGTCAAAACAAATGCAGAATACAAAACAATCCAATGAAAG
CTGGTTTAACTAGCAAAAGCTTCAGCACCTGCTGGACGCTGTGACTAAGCCAATTATAAG
AGCATTTCAATCAGTCATGTTGGCAGGAATGTGGCAATGGTCTGTGCCTCTTCTAGTCAC
AAGTTTGTTTTTGGAGGGGAGCCAGATACTGTTGGAAGAACATTCACCTGAATTTTGGTT
TATCTTTTACCAGTTTGAGTGCCTCCTGCATGGACAGCAGTGGGCTGAGTGCTAGGTGTT
ATAAAGATGAATGACTTGAAGTTAGTCATAAGACATGTATATAACCAATTACAATGTAGC
ATAGGATAGAAATAACAATAAAACATGGCCCCATGGGGGTTTTGGAAGAGAGGGATACTT
GGCTTCCTTAAGCAATTGGTAATGACAGTCCCTTTGTGGATACAGGCAAGCAGAAACTTT
TTCTGACAACCGACCCTCATTTGCTTTTTTCCCCCAATGGGATTGCCATTAGTATTTATG
TAAGTCAGGTGACTGTTTCTTGAATGATCCTTTTGAACAGAATGGCAACCTGTGGGTTGG
ATAATCAGACTTAGGGGGAACTGACCTGCTTAAACTCCTTAAACCAGTCAGTGCTATATG
TAAGAATTCAGGGTCAGCCTGGCCTCTGGAGGCCCTCTTCAACATTTCTGTCAAGGATCT
GGATGAAGATAGTGTACAAGAAGATATTCAGTGGAGAAAAAAGGATCCGATCCATTCAGT
TCCTGCTGTGCTTCAGCTGTCTTATCTATAAAATGTAGATTTCATGTCTTGCCTACCTCA
CAAGGTGTTGTAAGGATCAAATTAAATATTACGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAACTGCTTTTATTTTTTGGTCAAAACAAATGCAGAATACAAAACAATCCAATGAAAG
CTGGTTTAACTAGCAAAAGCTTCAGCACCTGCTGGACGCTGTGACTAAGCCAATTATAAG
AGCATTTCAATCAGTCATGTTGGCAGGAATGTGGCAATGGTCTGTGCCTCTTCTAGTCAC
AAGTTTGTTTTTGGAGGGGAGCCAGATACTGTTGGAAGAACATTCACCTGAATTTTGGTT
TATCTTTTACCAGTTTGAGTGCCTCCTGCATGGACAGCAGTGGGCTGAGTGCTAGGTGTT
ATAAAGATGAATGACTTGAAGTTAGTCATAAGACATGTATATAACCAATTACAATGTAGC
ATAGGATAGAAATAACAATAAAACATGGCCCCATGGGGGTTTTGGAAGAGAGGGATACTT
GGCTTCCTTAAGCAATTGGTAATGACAGTCCCTTTGTGGATACAGGCAAGCAGAAACTTT
TTCTGACAACCGACCCTCATTTGCTTTTTTCCCCCAATGGGATTGCCATTAGTATTTATG
TAAGTCAGGTGACTGTTTCTTGAATGATCCTTTTGAACAGAATGGCAACCTGTGGGTTGG
ATAATCAGACTTAGGGGGAACTGACCTGCTTAAACTCCTTAAACCAGTCAGTGCTATATG
TAAGAATTCAGGGTCAGCCTGGCCTCTGGAGGCCCTCTTCAACATTTCTGTCAAGGATCT
GGATGAAGATAGTGTACAAGAAGATATTCAGTGGAGAAAAAAGGATCCGATCCATTCAGT
TCCTGCTGTGCTTCAGCTGTCTTATCTATAAAATGTAGATTTCATGTCTTGCCTACCTCA
CAAGGTGTTGTAAGGATCAAATTAAATATTACGGAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               2-159, - strand, RNAz p=0.957743
               

               
               240-354, - strand, RNAz p=0.871905

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-159, - strand, RNAz p=0.957743
               

               
               240-354, - strand, RNAz p=0.871905

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-876, gnl|bosTau2|chr3 (73368686-73367831)
               

               
               2-876, gnl|Hg17|chr1 (38998127-38997264)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-876, gnl|bosTau2|chr3 (73368686-73367831)
               

               
               2-876, gnl|Hg17|chr1 (38998127-38997264)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tes (0.207814)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               nbm (0.0993246)

	2-159, - strand, RNAz p=0.957743
	240-354, - strand, RNAz p=0.871905

	2-876, gnl\|bosTau2\|chr3 (73368686-73367831)
	2-876, gnl\|Hg17\|chr1 (38998127-38997264)