Non-Coding RNA Search

Ss1.1-End1-UMC-pd3end2-003-d06.3

Sequence:


               
               GATATAGATGTTGTATGAACTTTACATTGAAAGTTTAATGGCTTGGAATGTGTGCATTAA
CCCATTTTTAGAAAATACCACTACCCATTAATTATGGACCAACCCATGAGTTAGGTGTAC
TGTACTTGAGAGCAGTACTCCATGAATGTGAGTGGTAAGAAAGAGTTCTATCCTAGAATG
CCCACTGGTGCAACGAAAAAGTAGATTAGATGCTACTAAGAAGCACCTGATAGTATATCA
TGTAAGATGGCAACTGTATTAAAAAAAAAAAGCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATATAGATGTTGTATGAACTTTACATTGAAAGTTTAATGGCTTGGAATGTGTGCATTAA
CCCATTTTTAGAAAATACCACTACCCATTAATTATGGACCAACCCATGAGTTAGGTGTAC
TGTACTTGAGAGCAGTACTCCATGAATGTGAGTGGTAAGAAAGAGTTCTATCCTAGAATG
CCCACTGGTGCAACGAAAAAGTAGATTAGATGCTACTAAGAAGCACCTGATAGTATATCA
TGTAAGATGGCAACTGTATTAAAAAAAAAAAGCAGG

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               11-269, gnl|bosTau2|chr4 (60287121-60286868)
               

               
               11-269, gnl|canFam2|chr33 (31730526-31730204)
               

               
               11-269, gnl|dasNov1|scaffold_11884 (42005-41680)
               

               
               11-269, gnl|echTel1|scaffold_229453 (558-859)
               

               
               11-269, gnl|galGal2|chr1 (53067198-53066850)
               

               
               11-269, gnl|hg17|chr7 (137727217-137727551)
               

               
               11-269, gnl|Hg17|chr7 (137727301-137727575)
               

               
               11-269, gnl|loxAfr1|scaffold_23802 (23569-23262)
               

               
               11-269, gnl|mm7|chr6 (37896878-37897184)
               

               
               11-269, gnl|Mm7|chr6 (37896954-37897208)
               

               
               11-269, gnl|monDom2|scaffold_22 (3932529-3932191)
               

               
               11-269, gnl|oryCun1|scaffold_82570 (349-665)
               

               
               11-269, gnl|panTro1|chr6 (140482466-140482800)
               

               
               11-269, gnl|rheMac2|chr3 (176078187-176078513)
               

               
               11-269, gnl|rn3|chr4 (65793541-65793844)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-269, gnl|bosTau2|chr4 (60287121-60286868)
               

               
               11-269, gnl|canFam2|chr33 (31730526-31730204)
               

               
               11-269, gnl|dasNov1|scaffold_11884 (42005-41680)
               

               
               11-269, gnl|echTel1|scaffold_229453 (558-859)
               

               
               11-269, gnl|galGal2|chr1 (53067198-53066850)
               

               
               11-269, gnl|hg17|chr7 (137727217-137727551)
               

               
               11-269, gnl|Hg17|chr7 (137727301-137727575)
               

               
               11-269, gnl|loxAfr1|scaffold_23802 (23569-23262)
               

               
               11-269, gnl|mm7|chr6 (37896878-37897184)
               

               
               11-269, gnl|Mm7|chr6 (37896954-37897208)
               

               
               11-269, gnl|monDom2|scaffold_22 (3932529-3932191)
               

               
               11-269, gnl|oryCun1|scaffold_82570 (349-665)
               

               
               11-269, gnl|panTro1|chr6 (140482466-140482800)
               

               
               11-269, gnl|rheMac2|chr3 (176078187-176078513)
               

               
               11-269, gnl|rn3|chr4 (65793541-65793844)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ton (0.1755)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	11-269, gnl\|bosTau2\|chr4 (60287121-60286868)
	11-269, gnl\|canFam2\|chr33 (31730526-31730204)
	11-269, gnl\|dasNov1\|scaffold_11884 (42005-41680)
	11-269, gnl\|echTel1\|scaffold_229453 (558-859)
	11-269, gnl\|galGal2\|chr1 (53067198-53066850)
	11-269, gnl\|hg17\|chr7 (137727217-137727551)
	11-269, gnl\|Hg17\|chr7 (137727301-137727575)
	11-269, gnl\|loxAfr1\|scaffold_23802 (23569-23262)
	11-269, gnl\|mm7\|chr6 (37896878-37897184)
	11-269, gnl\|Mm7\|chr6 (37896954-37897208)
	11-269, gnl\|monDom2\|scaffold_22 (3932529-3932191)
	11-269, gnl\|oryCun1\|scaffold_82570 (349-665)
	11-269, gnl\|panTro1\|chr6 (140482466-140482800)
	11-269, gnl\|rheMac2\|chr3 (176078187-176078513)
	11-269, gnl\|rn3\|chr4 (65793541-65793844)