Ss1.1-End1-UMC-pd3end3-002-f10.3
|
GTTTCAGTTCTGAACATCTGTTTCCTCAGTAGCAGTGACCGGTTTCATTTCGAACTTAGT
CCATCCAGAGACTTAGTGTAGTGCCAGGGAGCCCTGGAGCTGGAGGATATCAAATAGATT
AGATTTTGCTCGTCTTTTTCCCCAAACCCTAACCATGAGAGTTACAAACAGCAGATTCCA
GGAGCCTCCCACCCTCTCTCTCTCTTTATCAACTTCCCTCCCAAATGAGAGAAAGAACTA
GAGAGAGAGTTGGTTTTTATAAATCAGAGTTTCCTAATTGTATTGGGTTTTGATACACGA
GTGGTCTAAAATGCTATTGTGCAGTTACCAGCAGCTGCTGCACAGATTGCCACCTGTGCC
ATGAAGGACTGTTGTTTTCACAAGGGAACATCCCTCCCTCCTGCCACCTCTACCCCCGTT
CAATGAAACGTCATTTTAATTTCTCTTTTAAAAAACCAGTTTAATTCTTACTGTGCCCAT
CATGAAGGCCTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTTTCAGTTCTGAACATCTGTTTCCTCAGTAGCAGTGACCGGTTTCATTTCGAACTTAGT
CCATCCAGAGACTTAGTGTAGTGCCAGGGAGCCCTGGAGCTGGAGGATATCAAATAGATT
AGATTTTGCTCGTCTTTTTCCCCAAACCCTAACCATGAGAGTTACAAACAGCAGATTCCA
GGAGCCTCCCACCCTCTCTCTCTCTTTATCAACTTCCCTCCCAAATGAGAGAAAGAACTA
GAGAGAGAGTTGGTTTTTATAAATCAGAGTTTCCTAATTGTATTGGGTTTTGATACACGA
GTGGTCTAAAATGCTATTGTGCAGTTACCAGCAGCTGCTGCACAGATTGCCACCTGTGCC
ATGAAGGACTGTTGTTTTCACAAGGGAACATCCCTCCCTCCTGCCACCTCTACCCCCGTT
CAATGAAACGTCATTTTAATTTCTCTTTTAAAAAACCAGTTTAATTCTTACTGTGCCCAT
CATGAAGGCCTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
162-296, UMC-pd3end3-002-f10 Endometrium gilt D3 of estrous cycle pd3end Sus
(gb|CO988479.1|), blast E-value=0, identity=91.11% |
|
151-296, POSM0605017_K17R porcine skeletal muscle cDNA library (PoSM) Sus
(gb|DV901294.1|), blast E-value=0, identity=91.78% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
162-296, UMC-pd3end3-002-f10 Endometrium gilt D3 of estrous cycle pd3end Sus
(gb|CO988479.1|), blast E-value=0, identity=91.11% |
|
151-296, POSM0605017_K17R porcine skeletal muscle cDNA library (PoSM) Sus
(gb|DV901294.1|), blast E-value=0, identity=91.78% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
