Ss1.1-End1-UMC-pd3end3-003-f09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCAGCCCAAGACGTACGGCTTCGGCAGCGTGGAGGAGCTCCTGGGGGCAATCCCGCAG GTGGTCTGGATAAAGGGACATGGTCACAAGAGGATTGTCGTGTTAAAAAATGACATGAAA AGCCGCCTGTGTTCACTTGGTGTCTCCCCTGCCGATCATGACCCCCAGCCCTCAGCTGCC GAGCGCATCCTGGAGGTGCCCGAATCGCCGCACAGCCTCGGAACTCAAGCTCGGAGCAGG TGGCGACGGGCCCCAGCCAGTGGAGCAGGAGCTTCTCCGACTGACCGAGTCCCCCGTGGA CCTTCTGTGCGCGCCTGTCCCCTCCTGCCTGCCGTCCCCCCAGCTGAGACCCGATCCCGT CATCCTCCAGTCTGCTGACCTCATCCAGTTCGAGGAACACCCTCAGGAGCCTCCTGAAGT TTTGATTTTAAACCAAGAAGAGAAAATTGAAATTCCAATGCCAATCAAGAACGAAAACCT GCCCTCTGATTCCAGCTCGCCTGGCGTCTCAGCAGCTGTCCCAGTGCCTCCCTGCCCTTC CTCGGAAACCCCGGGGTCCCTGCTCAGCAAGGACCCGGTGGAAAGCCCAGCCAAAAAGCA GCCCAAAAATAGAGTAAAATTGGCAGCCAACTTTTCCTTTGCACCTATAACCAAGCTTTG ACTCTCGTTTTGAACATAGAATTAGGATGGGAAAACGCTGTCTGATTCTGCACACAAAAG CGGGTTCAAAAAACACAGCCTTTTCTGTTTTAATGAAACCCCCCCCAGAAACCACTTACT TCTTCTTTAGACATGTTCCATAATGTTTTGTTTCTTTTACGTTGAACACGGCTTTGAGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCAGCCCAAGACGTACGGCTTCGGCAGCGTGGAGGAGCTCCTGGGGGCAATCCCGCAG GTGGTCTGGATAAAGGGACATGGTCACAAGAGGATTGTCGTGTTAAAAAATGACATGAAA AGCCGCCTGTGTTCACTTGGTGTCTCCCCTGCCGATCATGACCCCCAGCCCTCAGCTGCC GAGCGCATCCTGGAGGTGCCCGAATCGCCGCACAGCCTCGGAACTCAAGCTCGGAGCAGG TGGCGACGGGCCCCAGCCAGTGGAGCAGGAGCTTCTCCGACTGACCGAGTCCCCCGTGGA CCTTCTGTGCGCGCCTGTCCCCTCCTGCCTGCCGTCCCCCCAGCTGAGACCCGATCCCGT CATCCTCCAGTCTGCTGACCTCATCCAGTTCGAGGAACACCCTCAGGAGCCTCCTGAAGT TTTGATTTTAAACCAAGAAGAGAAAATTGAAATTCCAATGCCAATCAAGAACGAAAACCT GCCCTCTGATTCCAGCTCGCCTGGCGTCTCAGCAGCTGTCCCAGTGCCTCCCTGCCCTTC CTCGGAAACCCCGGGGTCCCTGCTCAGCAAGGACCCGGTGGAAAGCCCAGCCAAAAAGCA GCCCAAAAATAGAGTAAAATTGGCAGCCAACTTTTCCTTTGCACCTATAACCAAGCTTTG ACTCTCGTTTTGAACATAGAATTAGGATGGGAAAACGCTGTCTGATTCTGCACACAAAAG CGGGTTCAAAAAACACAGCCTTTTCTGTTTTAATGAAACCCCCCCCAGAAACCACTTACT TCTTCTTTAGACATGTTCCATAATGTTTTGTTTCTTTTACGTTGAACACGGCTTTGAGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 248-412, gnl|bosTau2|chr25 (16175876-16175709) | |
| 248-412, gnl|canFam2|chr6 (31256240-31256045) | |
| 248-412, gnl|danRer3|chrNA (240742704-240742572) | |
| 248-412, gnl|dasNov1|scaffold_4787 (80064-79870) | |
| 248-412, gnl|echTel1|scaffold_175206 (1547-1352) | |
| 248-412, gnl|fr1|chrUn (249145041-249145174) | |
| 248-412, gnl|galGal2|chr14 (9550821-9551010) | |
| 248-412, gnl|hg17|chr16 (15600208-15600402) | |
| 248-412, gnl|Hg17|chr16 (15600383-15600216) | |
| 248-412, gnl|loxAfr1|scaffold_45477 (19459-19653) | |
| 248-412, gnl|mm7|chr16 (13660687-13660879) | |
| 248-412, gnl|Mm7|chr16 (13660862-13660695) | |
| 248-412, gnl|monDom2|scaffold_17 (27667799-27667607) | |
| 248-412, gnl|oryCun1|scaffold_197180 (56477-56283) | |
| 248-412, gnl|panTro1|chr18 (15970156-15970354) | |
| 248-412, gnl|rheMac2|chr20 (15312852-15313046) | |
| 248-412, gnl|rn3|chr10 (867011-866817) | |
| 248-412, gnl|tetNig1|chrUn_random (127431891-127431746) | |
| 248-412, gnl|xenTro1|scaffold_290 (59288-59143) | |
| 416-840, gnl|bosTau2|chr25 (16173785-16173370) | |
| 416-840, gnl|Hg17|chr16 (15598296-15597879) | |
| 416-840, gnl|Mm7|chr16 (13658280-13657833) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 248-412, gnl|bosTau2|chr25 (16175876-16175709) | |
| 248-412, gnl|canFam2|chr6 (31256240-31256045) | |
| 248-412, gnl|danRer3|chrNA (240742704-240742572) | |
| 248-412, gnl|dasNov1|scaffold_4787 (80064-79870) | |
| 248-412, gnl|echTel1|scaffold_175206 (1547-1352) | |
| 248-412, gnl|fr1|chrUn (249145041-249145174) | |
| 248-412, gnl|galGal2|chr14 (9550821-9551010) | |
| 248-412, gnl|hg17|chr16 (15600208-15600402) | |
| 248-412, gnl|Hg17|chr16 (15600383-15600216) | |
| 248-412, gnl|loxAfr1|scaffold_45477 (19459-19653) | |
| 248-412, gnl|mm7|chr16 (13660687-13660879) | |
| 248-412, gnl|Mm7|chr16 (13660862-13660695) | |
| 248-412, gnl|monDom2|scaffold_17 (27667799-27667607) | |
| 248-412, gnl|oryCun1|scaffold_197180 (56477-56283) | |
| 248-412, gnl|panTro1|chr18 (15970156-15970354) | |
| 248-412, gnl|rheMac2|chr20 (15312852-15313046) | |
| 248-412, gnl|rn3|chr10 (867011-866817) | |
| 248-412, gnl|tetNig1|chrUn_random (127431891-127431746) | |
| 248-412, gnl|xenTro1|scaffold_290 (59288-59143) | |
| 416-840, gnl|bosTau2|chr25 (16173785-16173370) | |
| 416-840, gnl|Hg17|chr16 (15598296-15597879) | |
| 416-840, gnl|Mm7|chr16 (13658280-13657833) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) | |
| jca (0.11396) |