Non-Coding RNA Search

Ss1.1-End1-UMC-pd3end3-004-d04.3

Sequence:


               
               CCGCAGCCCCGGTTCACCTTTACTGTGTGGAGGTCTGCTGCGGGGACCTGCAGCTGGACA
ACCAGCTGTACAACAAGTCCAATTTCCACTTCGCCGTCTTGGTCTGCCAGGGGGAGAAAA
CGGAACCCAGCCCGTGTGCCAAAATGCAGAGTCTCCTTGTGTCCAGCCACGATTTGGAAG
AATACAGGAAGAAGTGTTTTATCAAATTCTGCCTCACCTTAGCAGAGGGCAAGAGCTGCT
CCTTTGATATTAACGAGTTCAGTTTTGAATTGAAACCTGCCCGGTTGTATGTGGAAGATA
CATTTGTCTATTACGTCAAAACCCTGTTTGAGACCTACCTTCCGAGCGGCGGCCCGGCCA
CTCACGCCCCGCTCCTGGCGGGGGGCACACAGGGGTTGCCCCTGCAAGTCCGGCAGCACG
CCAGGGCCCTGGTGCATCCTGTGAGGTTACGGAAGCTGGTGATACAGCCCGTGAACCTCC
TCGTCAGCATCCACGCCTCCCTCAAGCTGTACATCGCCTCGGACCACACTCCGCTCTCCT
TCTCCGTGTTCGAAAGAGGCCCCATCTTCACCACGGCCAGGCAGCTGGTCCACGCTCTGG
CCATGCACTACGCCGCGGGGGCTCTCTTCAGGGCAGGTGAGGACTCAGCTAATCAGCGTG
TCCCAGTCACCAGCGTTTACACAACTGAAGCTGGGATTGAAGGGGAGACGTCCGTCTGGC
TCCAGCTCCACTCCAAAAGCTTGGTAGGATTGGGAAAGATTAAAAGTAACTCCTCCATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCAGCCCCGGTTCACCTTTACTGTGTGGAGGTCTGCTGCGGGGACCTGCAGCTGGACA
ACCAGCTGTACAACAAGTCCAATTTCCACTTCGCCGTCTTGGTCTGCCAGGGGGAGAAAA
CGGAACCCAGCCCGTGTGCCAAAATGCAGAGTCTCCTTGTGTCCAGCCACGATTTGGAAG
AATACAGGAAGAAGTGTTTTATCAAATTCTGCCTCACCTTAGCAGAGGGCAAGAGCTGCT
CCTTTGATATTAACGAGTTCAGTTTTGAATTGAAACCTGCCCGGTTGTATGTGGAAGATA
CATTTGTCTATTACGTCAAAACCCTGTTTGAGACCTACCTTCCGAGCGGCGGCCCGGCCA
CTCACGCCCCGCTCCTGGCGGGGGGCACACAGGGGTTGCCCCTGCAAGTCCGGCAGCACG
CCAGGGCCCTGGTGCATCCTGTGAGGTTACGGAAGCTGGTGATACAGCCCGTGAACCTCC
TCGTCAGCATCCACGCCTCCCTCAAGCTGTACATCGCCTCGGACCACACTCCGCTCTCCT
TCTCCGTGTTCGAAAGAGGCCCCATCTTCACCACGGCCAGGCAGCTGGTCCACGCTCTGG
CCATGCACTACGCCGCGGGGGCTCTCTTCAGGGCAGGTGAGGACTCAGCTAATCAGCGTG
TCCCAGTCACCAGCGTTTACACAACTGAAGCTGGGATTGAAGGGGAGACGTCCGTCTGGC
TCCAGCTCCACTCCAAAAGCTTGGTAGGATTGGGAAAGATTAAAAGTAACTCCTCCATCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55631018|ref|XP_519881.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55631018|ref|XP_519881.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-199, - strand, RNAz p=0.94201

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.94201

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-649, gnl|bosTau2|chr14 (39120260-39120908)
               

               
               1-649, gnl|canFam2|chr13 (4812791-4813589)
               

               
               1-649, gnl|danRer3|chrNA (163479457-163478725)
               

               
               1-649, gnl|dasNov1|scaffold_27526 (43006-43801)
               

               
               1-649, gnl|echTel1|scaffold_311173 (3517-4316)
               

               
               1-649, gnl|fr1|chrUn (11977298-11976291)
               

               
               1-649, gnl|galGal2|chr2 (127319270-127320079)
               

               
               1-649, gnl|hg17|chr8 (100934878-100935673)
               

               
               1-649, gnl|Hg17|chr8 (100935025-100935674)
               

               
               1-649, gnl|loxAfr1|scaffold_68681 (7168-6380)
               

               
               1-649, gnl|mm7|chr15 (36019496-36020288)
               

               
               1-649, gnl|Mm7|chr15 (36019640-36020288)
               

               
               1-649, gnl|monDom2|scaffold_3 (64133057-64132255)
               

               
               1-649, gnl|panTro1|chr7 (103310854-103311657)
               

               
               1-649, gnl|rheMac2|chr8 (102372727-102373522)
               

               
               1-649, gnl|rn3|chr7 (71465066-71465861)
               

               
               1-649, gnl|tetNig1|chr8 (10002759-10003745)
               

               
               1-649, gnl|xenTro1|scaffold_59 (689910-690726)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-649, gnl|bosTau2|chr14 (39120260-39120908)
               

               
               1-649, gnl|canFam2|chr13 (4812791-4813589)
               

               
               1-649, gnl|danRer3|chrNA (163479457-163478725)
               

               
               1-649, gnl|dasNov1|scaffold_27526 (43006-43801)
               

               
               1-649, gnl|echTel1|scaffold_311173 (3517-4316)
               

               
               1-649, gnl|fr1|chrUn (11977298-11976291)
               

               
               1-649, gnl|galGal2|chr2 (127319270-127320079)
               

               
               1-649, gnl|hg17|chr8 (100934878-100935673)
               

               
               1-649, gnl|Hg17|chr8 (100935025-100935674)
               

               
               1-649, gnl|loxAfr1|scaffold_68681 (7168-6380)
               

               
               1-649, gnl|mm7|chr15 (36019496-36020288)
               

               
               1-649, gnl|Mm7|chr15 (36019640-36020288)
               

               
               1-649, gnl|monDom2|scaffold_3 (64133057-64132255)
               

               
               1-649, gnl|panTro1|chr7 (103310854-103311657)
               

               
               1-649, gnl|rheMac2|chr8 (102372727-102373522)
               

               
               1-649, gnl|rn3|chr7 (71465066-71465861)
               

               
               1-649, gnl|tetNig1|chr8 (10002759-10003745)
               

               
               1-649, gnl|xenTro1|scaffold_59 (689910-690726)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	1-649, gnl\|bosTau2\|chr14 (39120260-39120908)
	1-649, gnl\|canFam2\|chr13 (4812791-4813589)
	1-649, gnl\|danRer3\|chrNA (163479457-163478725)
	1-649, gnl\|dasNov1\|scaffold_27526 (43006-43801)
	1-649, gnl\|echTel1\|scaffold_311173 (3517-4316)
	1-649, gnl\|fr1\|chrUn (11977298-11976291)
	1-649, gnl\|galGal2\|chr2 (127319270-127320079)
	1-649, gnl\|hg17\|chr8 (100934878-100935673)
	1-649, gnl\|Hg17\|chr8 (100935025-100935674)
	1-649, gnl\|loxAfr1\|scaffold_68681 (7168-6380)
	1-649, gnl\|mm7\|chr15 (36019496-36020288)
	1-649, gnl\|Mm7\|chr15 (36019640-36020288)
	1-649, gnl\|monDom2\|scaffold_3 (64133057-64132255)
	1-649, gnl\|panTro1\|chr7 (103310854-103311657)
	1-649, gnl\|rheMac2\|chr8 (102372727-102373522)
	1-649, gnl\|rn3\|chr7 (71465066-71465861)
	1-649, gnl\|tetNig1\|chr8 (10002759-10003745)
	1-649, gnl\|xenTro1\|scaffold_59 (689910-690726)