Non-Coding RNA Search

Ss1.1-End1-UMC-pd3end3-012-c03.3

Sequence:


               
               CCATGTACATTAACCATATTTTTAAAGTACTATTTTGTTTTTACAAAAAACATAAAATGC
AGACGAGGACCGTATATTCTTTTTGAGGAGTTTTATAAATTCTTCATTACAGTTTGTGGG
GTTTTTCCCTAATTTTTTATATTTTCTTGTAATTTGGTGGCCATTAATTTAACTTTGGGC
TTTTTGGTATATGCTAATTTAGGTAGTCAGAGATTTCAAGAAGATACATAAACATTTCCA
TTTTAATTAATTGAATAAGGACATTTTAAGTTGAAAGAGAAGTTGTTTTCAAGTCGAATA
TATTCTCTTTCAGAATTTACCTGATTATTAAATAATTTAAATTTTATTTTTAAAAGCTGA
GAATTGTTGAGTAGGCAGTTCCTAAAAGTACAAGTCAGATAGCAAATATCAACAGACTAG
TGTGTAAAATAAAATGGTTTTATTTTCAGTTTTGCAGCACAAAATACTGATTAGTATATA
TAAACATCCACATCATTATGGACTTTTTTTTTTTTTTTTGTCTGATTCAGATGTCTCTCG
AGTGACATCTCTTAAATGTTTGGGGTTGGGAATCAGAACCAGTTATCTGGCTTCTCTTGT
CCATTGCTTAGGTTTGTTCTTGTTGTCAAAACTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATGTACATTAACCATATTTTTAAAGTACTATTTTGTTTTTACAAAAAACATAAAATGC
AGACGAGGACCGTATATTCTTTTTGAGGAGTTTTATAAATTCTTCATTACAGTTTGTGGG
GTTTTTCCCTAATTTTTTATATTTTCTTGTAATTTGGTGGCCATTAATTTAACTTTGGGC
TTTTTGGTATATGCTAATTTAGGTAGTCAGAGATTTCAAGAAGATACATAAACATTTCCA
TTTTAATTAATTGAATAAGGACATTTTAAGTTGAAAGAGAAGTTGTTTTCAAGTCGAATA
TATTCTCTTTCAGAATTTACCTGATTATTAAATAATTTAAATTTTATTTTTAAAAGCTGA
GAATTGTTGAGTAGGCAGTTCCTAAAAGTACAAGTCAGATAGCAAATATCAACAGACTAG
TGTGTAAAATAAAATGGTTTTATTTTCAGTTTTGCAGCACAAAATACTGATTAGTATATA
TAAACATCCACATCATTATGGACTTTTTTTTTTTTTTTTGTCTGATTCAGATGTCTCTCG
AGTGACATCTCTTAAATGTTTGGGGTTGGGAATCAGAACCAGTTATCTGGCTTCTCTTGT
CCATTGCTTAGGTTTGTTCTTGTTGTCAAAACTGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               495-595, - strand, RNAz p=0.940383

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               495-595, - strand, RNAz p=0.940383

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-634, gnl|bosTau2|chr5 (22751199-22750581)
               

               
               1-634, gnl|canFam2|chr27 (7258958-7258352)
               

               
               1-634, gnl|dasNov1|scaffold_62938 (3526-2960)
               

               
               1-634, gnl|hg17|chr10 (57301420-57301974)
               

               
               1-634, gnl|Hg17|chr12 (49159300-49159911)
               

               
               1-634, gnl|loxAfr1|scaffold_9898 (12468-13035)
               

               
               1-634, gnl|Mm7|chr15 (100000854-100001458)
               

               
               1-634, gnl|mm7|chr7 (135132084-135132619)
               

               
               1-634, gnl|oryCun1|scaffold_178299 (54052-53485)
               

               
               1-634, gnl|panTro1|chr8 (58170385-58170940)
               

               
               1-634, gnl|rheMac2|chr9 (81454746-81454191)
               

               
               1-634, gnl|rn3|chr18 (37528050-37527506)
               


               
               406-623, gnl|bosTau2|chr11 (370694-370906)
               

               
               406-623, gnl|Hg17|chr3 (182771700-182771890)
               

               
               406-623, gnl|Mm7|chr4 (83110203-83110421)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-634, gnl|bosTau2|chr5 (22751199-22750581)
               

               
               1-634, gnl|canFam2|chr27 (7258958-7258352)
               

               
               1-634, gnl|dasNov1|scaffold_62938 (3526-2960)
               

               
               1-634, gnl|hg17|chr10 (57301420-57301974)
               

               
               1-634, gnl|Hg17|chr12 (49159300-49159911)
               

               
               1-634, gnl|loxAfr1|scaffold_9898 (12468-13035)
               

               
               1-634, gnl|Mm7|chr15 (100000854-100001458)
               

               
               1-634, gnl|mm7|chr7 (135132084-135132619)
               

               
               1-634, gnl|oryCun1|scaffold_178299 (54052-53485)
               

               
               1-634, gnl|panTro1|chr8 (58170385-58170940)
               

               
               1-634, gnl|rheMac2|chr9 (81454746-81454191)
               

               
               1-634, gnl|rn3|chr18 (37528050-37527506)
               


               
               406-623, gnl|bosTau2|chr11 (370694-370906)
               

               
               406-623, gnl|Hg17|chr3 (182771700-182771890)
               

               
               406-623, gnl|Mm7|chr4 (83110203-83110421)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               nms (0.213858)
               

               
               ill (0.175593)
               

               
               tbr (0.154178)
               

               
               sug (0.127291)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               ill (0.175593)
               

               
               tbr (0.154178)
               

               
               sug (0.127291)
               

               
               jca (0.11396)

	1-634, gnl\|bosTau2\|chr5 (22751199-22750581)
	1-634, gnl\|canFam2\|chr27 (7258958-7258352)
	1-634, gnl\|dasNov1\|scaffold_62938 (3526-2960)
	1-634, gnl\|hg17\|chr10 (57301420-57301974)
	1-634, gnl\|Hg17\|chr12 (49159300-49159911)
	1-634, gnl\|loxAfr1\|scaffold_9898 (12468-13035)
	1-634, gnl\|Mm7\|chr15 (100000854-100001458)
	1-634, gnl\|mm7\|chr7 (135132084-135132619)
	1-634, gnl\|oryCun1\|scaffold_178299 (54052-53485)
	1-634, gnl\|panTro1\|chr8 (58170385-58170940)
	1-634, gnl\|rheMac2\|chr9 (81454746-81454191)
	1-634, gnl\|rn3\|chr18 (37528050-37527506)

	406-623, gnl\|bosTau2\|chr11 (370694-370906)
	406-623, gnl\|Hg17\|chr3 (182771700-182771890)
	406-623, gnl\|Mm7\|chr4 (83110203-83110421)

	nms (0.213858)
	ill (0.175593)
	tbr (0.154178)
	sug (0.127291)
	jca (0.11396)