Ss1.1-End1-UMC-pd3end3-021-e04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGATTGAGACGGACAGTGGGACTGAAGATGACATGGCGTGTCAGAAAATACCAGTTGAG GCAGACTTCTTGTATGCATATTCTACAGCACCTGGTTACTATTCCTGGCGAAATTCAAAG GACGGATCCTGGTTCATCCAGTCACTTTGTGCAGCGCTGAAACAGTATGCTCACAAGCTT GAGCTTATGCACATTCTTACTCGGGTTAACCGAAAGGTAGCAGTAGAATTCGAGTCCTTT TCTACTGACTCTACTTTTCATGCAAAGAAACAGATTCCATGTATTGTGTCCATGCTCACA AAAGAACTCTATTTTTTTAATCACTAAAGAAATGAATGATTTGGGGTTGTTTTTTTTTAA TTTGTATGTGAAATGAGGAAATGGTTTAACTGATAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGATTGAGACGGACAGTGGGACTGAAGATGACATGGCGTGTCAGAAAATACCAGTTGAG GCAGACTTCTTGTATGCATATTCTACAGCACCTGGTTACTATTCCTGGCGAAATTCAAAG GACGGATCCTGGTTCATCCAGTCACTTTGTGCAGCGCTGAAACAGTATGCTCACAAGCTT GAGCTTATGCACATTCTTACTCGGGTTAACCGAAAGGTAGCAGTAGAATTCGAGTCCTTT TCTACTGACTCTACTTTTCATGCAAAGAAACAGATTCCATGTATTGTGTCCATGCTCACA AAAGAACTCTATTTTTTTAATCACTAAAGAAATGAATGATTTGGGGTTGTTTTTTTTTAA TTTGTATGTGAAATGAGGAAATGGTTTAACTGATAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 94-212, - strand, RNAz p=0.569122 | |
| 94-188, - strand, RNAz p=0.855887 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 94-212, - strand, RNAz p=0.569122 | |
| 94-188, - strand, RNAz p=0.855887 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-396, gnl|bosTau2|chr5 (19303751-19303377) | |
| 1-396, gnl|Hg17|chr4 (185927433-185925510) | |
| 1-396, gnl|Mm7|chr8 (45414098-45416087) | |
| 94-314, gnl|bosTau2|chr26 (22844074-22843854) | |
| 94-314, gnl|canFam2|chr28 (27628790-27629068) | |
| 94-314, gnl|danRer3|chr23 (32922749-32922972) | |
| 94-314, gnl|dasNov1|scaffold_47779 (5305-5582) | |
| 94-314, gnl|echTel1|scaffold_286426 (67680-67402) | |
| 94-314, gnl|fr1|chrUn (18936656-18936417) | |
| 94-314, gnl|galGal2|chr6 (26579002-26579242) | |
| 94-314, gnl|hg17|chr10 (115479036-115479312) | |
| 94-314, gnl|Hg17|chr10 (115479059-115479279) | |
| 94-314, gnl|loxAfr1|scaffold_91034 (653-376) | |
| 94-314, gnl|mm7|chr19 (56356433-56356698) | |
| 94-314, gnl|Mm7|chr19 (56356456-56356676) | |
| 94-314, gnl|monDom2|scaffold_14 (48492101-48491823) | |
| 94-314, gnl|oryCun1|scaffold_211247 (38563-38838) | |
| 94-314, gnl|panTro1|chr8 (117633078-117633354) | |
| 94-314, gnl|rheMac2|chr9 (113391629-113391905) | |
| 94-314, gnl|rn3|chr1 (262931054-262931316) | |
| 94-314, gnl|tetNig1|chr2 (6367548-6367320) | |
| 94-314, gnl|xenTro1|scaffold_1811 (47352-47599) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-396, gnl|bosTau2|chr5 (19303751-19303377) | |
| 1-396, gnl|Hg17|chr4 (185927433-185925510) | |
| 1-396, gnl|Mm7|chr8 (45414098-45416087) | |
| 94-314, gnl|bosTau2|chr26 (22844074-22843854) | |
| 94-314, gnl|canFam2|chr28 (27628790-27629068) | |
| 94-314, gnl|danRer3|chr23 (32922749-32922972) | |
| 94-314, gnl|dasNov1|scaffold_47779 (5305-5582) | |
| 94-314, gnl|echTel1|scaffold_286426 (67680-67402) | |
| 94-314, gnl|fr1|chrUn (18936656-18936417) | |
| 94-314, gnl|galGal2|chr6 (26579002-26579242) | |
| 94-314, gnl|hg17|chr10 (115479036-115479312) | |
| 94-314, gnl|Hg17|chr10 (115479059-115479279) | |
| 94-314, gnl|loxAfr1|scaffold_91034 (653-376) | |
| 94-314, gnl|mm7|chr19 (56356433-56356698) | |
| 94-314, gnl|Mm7|chr19 (56356456-56356676) | |
| 94-314, gnl|monDom2|scaffold_14 (48492101-48491823) | |
| 94-314, gnl|oryCun1|scaffold_211247 (38563-38838) | |
| 94-314, gnl|panTro1|chr8 (117633078-117633354) | |
| 94-314, gnl|rheMac2|chr9 (113391629-113391905) | |
| 94-314, gnl|rn3|chr1 (262931054-262931316) | |
| 94-314, gnl|tetNig1|chr2 (6367548-6367320) | |
| 94-314, gnl|xenTro1|scaffold_1811 (47352-47599) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.114797) |