Non-Coding RNA Search

Ss1.1-End3-UMC-pd6end1-008-h04.3

Sequence:


               
               ATGGCGACCGAGGCGCAGAGTGAAGGGGAGGTGCCAGCCCGGGAATGCAGCCGGAGTGAT
GCCATCTGCAATTTTGTTATCTGCAATGACTCTTCCCTTCGAAGTCAGCCCGTTATCTTC
AATCCTGACTTTTTTGTGGAGAAACTCCGGCATGAGAAACCAGAGGTGTTCACCGAGTTG
GTGGTCAGCAATATCACAAGGCTCATCGATTTACCTGGAACTGAGTTGGCTCAGCTGATG
GGAGAAGTGGACCTTAAGTTGCCTGGCGGGGCCGGCCCGGCATCAGGATTCTTCCGGTCT
CTAATGTCTCTCAAGCGAAAGGAAAAAGAAGTAATATTTGGATCCCCACTGACAGAAGAA
GGCATTGCCCAGATATACCAACTGATTGAATATCTACACAAAATTATTTTCTGGCTCTCC
AGCTGTCATGGTGACACCAACAAGACTGAAATTGCCTGAGGGGAAGAAAGAGGGGAAAAA
AGCCTAAGATGCCCCTCGAAGGATCCAGAGTGTTCCTGTGGTCCACCCAGAATGTTCTCT
TTTGTGGGCCGGGTGCCCACAGAACAACTTGGACTTGCAGCTTGCTTGCTGCATTTTGAA
TTGTGAAAGCCAACTAATCCTGTGACTTGACTGATACCTCTAACCCACTCAGTGGGTGAT
GTGTGCAGACTCTGCCCGCTGAACCAGTGCTACCGACGCTTCTCTTTTAAAAAGATGTTA
TGGGGAGACCACTAACCTGCCAGACCCGCTTGCACAGCCCAGTAAATAAGTAGAACCAGG
CAGACTCCAGTGCTCATTCCCTGTGTTTGATTAGGCAGATTCTATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGCGACCGAGGCGCAGAGTGAAGGGGAGGTGCCAGCCCGGGAATGCAGCCGGAGTGAT
GCCATCTGCAATTTTGTTATCTGCAATGACTCTTCCCTTCGAAGTCAGCCCGTTATCTTC
AATCCTGACTTTTTTGTGGAGAAACTCCGGCATGAGAAACCAGAGGTGTTCACCGAGTTG
GTGGTCAGCAATATCACAAGGCTCATCGATTTACCTGGAACTGAGTTGGCTCAGCTGATG
GGAGAAGTGGACCTTAAGTTGCCTGGCGGGGCCGGCCCGGCATCAGGATTCTTCCGGTCT
CTAATGTCTCTCAAGCGAAAGGAAAAAGAAGTAATATTTGGATCCCCACTGACAGAAGAA
GGCATTGCCCAGATATACCAACTGATTGAATATCTACACAAAATTATTTTCTGGCTCTCC
AGCTGTCATGGTGACACCAACAAGACTGAAATTGCCTGAGGGGAAGAAAGAGGGGAAAAA
AGCCTAAGATGCCCCTCGAAGGATCCAGAGTGTTCCTGTGGTCCACCCAGAATGTTCTCT
TTTGTGGGCCGGGTGCCCACAGAACAACTTGGACTTGCAGCTTGCTTGCTGCATTTTGAA
TTGTGAAAGCCAACTAATCCTGTGACTTGACTGATACCTCTAACCCACTCAGTGGGTGAT
GTGTGCAGACTCTGCCCGCTGAACCAGTGCTACCGACGCTTCTCTTTTAAAAAGATGTTA
TGGGGAGACCACTAACCTGCCAGACCCGCTTGCACAGCCCAGTAAATAAGTAGAACCAGG
CAGACTCCAGTGCTCATTCCCTGTGTTTGATTAGGCAGATTCTATTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61834005|ref|XP_608979.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61834005|ref|XP_608979.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               518-628, - strand, RNAz p=0.974565

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               518-628, - strand, RNAz p=0.974565

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               481-828, gnl|bosTau2|chr26 (8672274-8672630)
               

               
               481-828, gnl|canFam2|chr28 (13556999-13557642)
               

               
               481-828, gnl|dasNov1|scaffold_111200 (5899-5222)
               

               
               481-828, gnl|hg17|chr10 (98975251-98975858)
               

               
               481-828, gnl|Hg17|chr10 (98975886-98975548)
               

               
               481-828, gnl|loxAfr1|scaffold_8471 (15270-15920)
               

               
               481-828, gnl|mm7|chr19 (41663467-41664009)
               

               
               481-828, gnl|Mm7|chr19 (41664042-41663710)
               

               
               481-828, gnl|monDom2|scaffold_14 (25290695-25290033)
               

               
               481-828, gnl|oryCun1|scaffold_202559 (17967-17372)
               

               
               481-828, gnl|panTro1|chr8 (100700060-100700667)
               

               
               481-828, gnl|rheMac2|chr9 (96803135-96803738)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               481-828, gnl|bosTau2|chr26 (8672274-8672630)
               

               
               481-828, gnl|canFam2|chr28 (13556999-13557642)
               

               
               481-828, gnl|dasNov1|scaffold_111200 (5899-5222)
               

               
               481-828, gnl|hg17|chr10 (98975251-98975858)
               

               
               481-828, gnl|Hg17|chr10 (98975886-98975548)
               

               
               481-828, gnl|loxAfr1|scaffold_8471 (15270-15920)
               

               
               481-828, gnl|mm7|chr19 (41663467-41664009)
               

               
               481-828, gnl|Mm7|chr19 (41664042-41663710)
               

               
               481-828, gnl|monDom2|scaffold_14 (25290695-25290033)
               

               
               481-828, gnl|oryCun1|scaffold_202559 (17967-17372)
               

               
               481-828, gnl|panTro1|chr8 (100700060-100700667)
               

               
               481-828, gnl|rheMac2|chr9 (96803135-96803738)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	481-828, gnl\|bosTau2\|chr26 (8672274-8672630)
	481-828, gnl\|canFam2\|chr28 (13556999-13557642)
	481-828, gnl\|dasNov1\|scaffold_111200 (5899-5222)
	481-828, gnl\|hg17\|chr10 (98975251-98975858)
	481-828, gnl\|Hg17\|chr10 (98975886-98975548)
	481-828, gnl\|loxAfr1\|scaffold_8471 (15270-15920)
	481-828, gnl\|mm7\|chr19 (41663467-41664009)
	481-828, gnl\|Mm7\|chr19 (41664042-41663710)
	481-828, gnl\|monDom2\|scaffold_14 (25290695-25290033)
	481-828, gnl\|oryCun1\|scaffold_202559 (17967-17372)
	481-828, gnl\|panTro1\|chr8 (100700060-100700667)
	481-828, gnl\|rheMac2\|chr9 (96803135-96803738)