Non-Coding RNA Search

Ss1.1-End3-UMC-pd6end1-009-c08.3

Sequence:


               
               CGCACCCTGACTAATGACACTGACCCTCCTGCCCCCCCCCCCCCAGGGCCTCCTCCCCGC
CCTGCCCACGTCCCCCTGGGCTCCGAGGTGCCGAACCCCGTGCTCGTGCTAACCAGGTTC
TCTGCAGCTTACCCGCTGGCAAGAATACGAGCTTGGACCTTCCAACCACTAGAACAAAAT
TTTTTAAATTGACAGTTGCAGAATTGTGGAGTGTTTTTACATTGATCTTTTGCTAATGCA
ATTAGCAGTATGTTTTGCATGTACGACTTAATAAATCCTTGAATCATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACCCTGACTAATGACACTGACCCTCCTGCCCCCCCCCCCCCAGGGCCTCCTCCCCGC
CCTGCCCACGTCCCCCTGGGCTCCGAGGTGCCGAACCCCGTGCTCGTGCTAACCAGGTTC
TCTGCAGCTTACCCGCTGGCAAGAATACGAGCTTGGACCTTCCAACCACTAGAACAAAAT
TTTTTAAATTGACAGTTGCAGAATTGTGGAGTGTTTTTACATTGATCTTTTGCTAATGCA
ATTAGCAGTATGTTTTGCATGTACGACTTAATAAATCCTTGAATCATAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-300, gnl|bosTau2|chr1 (21468813-21469117)
               

               
               4-300, gnl|Hg17|chr7 (6216544-6216841)
               

               
               4-300, gnl|Mm7|chr5 (142538035-142537759)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-300, gnl|bosTau2|chr1 (21468813-21469117)
               

               
               4-300, gnl|Hg17|chr7 (6216544-6216841)
               

               
               4-300, gnl|Mm7|chr5 (142538035-142537759)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	4-300, gnl\|bosTau2\|chr1 (21468813-21469117)
	4-300, gnl\|Hg17\|chr7 (6216544-6216841)
	4-300, gnl\|Mm7\|chr5 (142538035-142537759)

	nlu (0.191681)
	sag (0.182715)
	mcp (0.170648)
	ese (0.126502)
	nbm (0.0993246)
	jej (0.0989218)