Non-Coding RNA Search

Ss1.1-End3-UMC-pd6end2-008-d03.3

Sequence:


               
               ACTGGAACAAAACCAAAATGTGACCATAACTTTTCAGGCTTATGTGTGTTTGTAATATGC
CCTGATAATCTGAGTAGAAATGCGTAATTTTGATCATTGTATAAAGTTCATGGGTTGTTT
TTTTAAAGTGTGCAGAATCTGAGAGTGATGGTTTTTACTTACCTGTATTAATTGTAATAT
TGACTATATTTTGTAACTTAAGTTTCCGGCTTAGAGTACATTCGTTTGAGTCATTTATGT
ACTACTGAACTGTACCAGTTGTACCTGCCCGAATCCTAGTAATGTTAGCTTGTTCTAAAG
CTATCCATTGTGTCATATTTACTCAAAAAAGTAAAAGGACTCTCCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGGAACAAAACCAAAATGTGACCATAACTTTTCAGGCTTATGTGTGTTTGTAATATGC
CCTGATAATCTGAGTAGAAATGCGTAATTTTGATCATTGTATAAAGTTCATGGGTTGTTT
TTTTAAAGTGTGCAGAATCTGAGAGTGATGGTTTTTACTTACCTGTATTAATTGTAATAT
TGACTATATTTTGTAACTTAAGTTTCCGGCTTAGAGTACATTCGTTTGAGTCATTTATGT
ACTACTGAACTGTACCAGTTGTACCTGCCCGAATCCTAGTAATGTTAGCTTGTTCTAAAG
CTATCCATTGTGTCATATTTACTCAAAAAAGTAAAAGGACTCTCCACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               227-344, - strand, RNAz p=0.770119

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-344, - strand, RNAz p=0.770119

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-344, gnl|bosTau2|chr9 (43744473-43744816)
               

               
               1-344, gnl|canFam2|chr1 (32150810-32151328)
               

               
               1-344, gnl|dasNov1|scaffold_40 (186730-187239)
               

               
               1-344, gnl|echTel1|scaffold_240878 (670-173)
               

               
               1-344, gnl|galGal2|chr3 (53976012-53975501)
               

               
               1-344, gnl|hg17|chr6 (136919862-136920386)
               

               
               1-344, gnl|Hg17|chr6 (136920221-136919884)
               

               
               1-344, gnl|mm7|chr10 (19866981-19866451)
               

               
               1-344, gnl|Mm7|chr10 (19866625-19866957)
               

               
               1-344, gnl|monDom2|scaffold_0 (73583980-73583473)
               

               
               1-344, gnl|oryCun1|scaffold_214233 (209319-209827)
               

               
               1-344, gnl|panTro1|chr5 (139721951-139722475)
               

               
               1-344, gnl|rheMac2|chr4 (127278235-127277711)
               

               
               1-344, gnl|rn3|chr1 (15413374-15412874)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-344, gnl|bosTau2|chr9 (43744473-43744816)
               

               
               1-344, gnl|canFam2|chr1 (32150810-32151328)
               

               
               1-344, gnl|dasNov1|scaffold_40 (186730-187239)
               

               
               1-344, gnl|echTel1|scaffold_240878 (670-173)
               

               
               1-344, gnl|galGal2|chr3 (53976012-53975501)
               

               
               1-344, gnl|hg17|chr6 (136919862-136920386)
               

               
               1-344, gnl|Hg17|chr6 (136920221-136919884)
               

               
               1-344, gnl|mm7|chr10 (19866981-19866451)
               

               
               1-344, gnl|Mm7|chr10 (19866625-19866957)
               

               
               1-344, gnl|monDom2|scaffold_0 (73583980-73583473)
               

               
               1-344, gnl|oryCun1|scaffold_214233 (209319-209827)
               

               
               1-344, gnl|panTro1|chr5 (139721951-139722475)
               

               
               1-344, gnl|rheMac2|chr4 (127278235-127277711)
               

               
               1-344, gnl|rn3|chr1 (15413374-15412874)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	1-344, gnl\|bosTau2\|chr9 (43744473-43744816)
	1-344, gnl\|canFam2\|chr1 (32150810-32151328)
	1-344, gnl\|dasNov1\|scaffold_40 (186730-187239)
	1-344, gnl\|echTel1\|scaffold_240878 (670-173)
	1-344, gnl\|galGal2\|chr3 (53976012-53975501)
	1-344, gnl\|hg17\|chr6 (136919862-136920386)
	1-344, gnl\|Hg17\|chr6 (136920221-136919884)
	1-344, gnl\|mm7\|chr10 (19866981-19866451)
	1-344, gnl\|Mm7\|chr10 (19866625-19866957)
	1-344, gnl\|monDom2\|scaffold_0 (73583980-73583473)
	1-344, gnl\|oryCun1\|scaffold_214233 (209319-209827)
	1-344, gnl\|panTro1\|chr5 (139721951-139722475)
	1-344, gnl\|rheMac2\|chr4 (127278235-127277711)
	1-344, gnl\|rn3\|chr1 (15413374-15412874)