Ss1.1-End3-UMC-pd6end2-013-a03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTTTTTTTTTTTTTTTTGTATTTCAATAAAACTTTATTTGTAAAAACAGTGCTGCCTG CAATTTGCCAGCCCTGGCTCTAGGGCCCCTTAGGGACTTGCCTTGGTACCATTCAGACTC AAAAAGTACTCTTGATTTATTTGTCTTTCCCTGTGTGCTTTCACAGGGATCTGCTCAAGC CTAAGAGGACAAGAGAGAGTAGTGTTAGCTATTGAACTCTTAACACATTTAAAAATCCTG AGATGAATGACTGAAGATGTCTAATATTCTGCTTTAGTATGAGAATAACTGTTGGGGAAA ATGGATCTCTTTTTTTTCTATTCACTGTTGCCTGGCAGTTTGAGTTATATAGTCCCTGAT GCTGTCACAGGTGACTCTTACTGTTCTCACCTGGAATGCATTGAGTAGCGCAAAAATAAC GTGCCAAGCCAGATTCCCGACAGGAGGAAAAGCAAGGCTTACAGAAGGATGCTCCTTCAG ACGGAAGCAGCACTAAAAGCACCCTGAGTCAAGATGAATGGGAAATGATCCCAATAAACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTTTTTTTTTTTTTTTTGTATTTCAATAAAACTTTATTTGTAAAAACAGTGCTGCCTG CAATTTGCCAGCCCTGGCTCTAGGGCCCCTTAGGGACTTGCCTTGGTACCATTCAGACTC AAAAAGTACTCTTGATTTATTTGTCTTTCCCTGTGTGCTTTCACAGGGATCTGCTCAAGC CTAAGAGGACAAGAGAGAGTAGTGTTAGCTATTGAACTCTTAACACATTTAAAAATCCTG AGATGAATGACTGAAGATGTCTAATATTCTGCTTTAGTATGAGAATAACTGTTGGGGAAA ATGGATCTCTTTTTTTTCTATTCACTGTTGCCTGGCAGTTTGAGTTATATAGTCCCTGAT GCTGTCACAGGTGACTCTTACTGTTCTCACCTGGAATGCATTGAGTAGCGCAAAAATAAC GTGCCAAGCCAGATTCCCGACAGGAGGAAAAGCAAGGCTTACAGAAGGATGCTCCTTCAG ACGGAAGCAGCACTAAAAGCACCCTGAGTCAAGATGAATGGGAAATGATCCCAATAAACA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 437-540, + strand, RNAz p=0.632219 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 437-540, + strand, RNAz p=0.632219 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 19-268, gnl|bosTau2|chr23 (18619764-18619507) | |
| 19-268, gnl|Hg17|chr6 (47084191-47084452) | |
| 19-268, gnl|Mm7|chr17 (41432747-41432492) | |
| 437-540, gnl|bosTau2|chrX (25775889-25775786) | |
| 437-540, gnl|canFam2|chr26 (25674542-25674468) | |
| 437-540, gnl|canFam2|chr26 (25674564-25674468) | |
| 437-540, gnl|danRer3|chr1 (17310551-17310500) | |
| 437-540, gnl|dasNov1|scaffold_93352 (8145-8073) | |
| 437-540, gnl|dasNov1|scaffold_93352 (8168-8073) | |
| 437-540, gnl|echTel1|scaffold_291800 (26750-26687) | |
| 437-540, gnl|echTel1|scaffold_291800 (26770-26677) | |
| 437-540, gnl|fr1|chrUn (185520237-185520210) | |
| 437-540, gnl|Hg17|chr12 (3191149-3191046) | |
| 437-540, gnl|hg17|chr3 (27640651-27640725) | |
| 437-540, gnl|hg17|chr3 (130419562-130419659) | |
| 437-540, gnl|loxAfr1|scaffold_81880 (5518-5444) | |
| 437-540, gnl|loxAfr1|scaffold_81880 (5549-5444) | |
| 437-540, gnl|Mm7|chr15 (99691863-99691762) | |
| 437-540, gnl|mm7|chr9 (114633505-114633577) | |
| 437-540, gnl|mm7|chr9 (114633485-114633577) | |
| 437-540, gnl|monDom2|scaffold_2 (74223129-74223187) | |
| 437-540, gnl|oryCun1|scaffold_166788 (7168-7073) | |
| 437-540, gnl|oryCun1|scaffold_80740 (2715-2641) | |
| 437-540, gnl|panTro1|chr2 (28574970-28575044) | |
| 437-540, gnl|panTro1|chr2_random (9036981-9036883) | |
| 437-540, gnl|rheMac2|chr11 (85623825-85623726) | |
| 437-540, gnl|rheMac2|chr2 (170021986-170022060) | |
| 437-540, gnl|rn3|chr12 (29006793-29006877) | |
| 437-540, gnl|rn3|chrUn (25450974-25451027) | |
| 437-540, gnl|tetNig1|chr8 (8006070-8006097) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 19-268, gnl|bosTau2|chr23 (18619764-18619507) | |
| 19-268, gnl|Hg17|chr6 (47084191-47084452) | |
| 19-268, gnl|Mm7|chr17 (41432747-41432492) | |
| 437-540, gnl|bosTau2|chrX (25775889-25775786) | |
| 437-540, gnl|canFam2|chr26 (25674542-25674468) | |
| 437-540, gnl|canFam2|chr26 (25674564-25674468) | |
| 437-540, gnl|danRer3|chr1 (17310551-17310500) | |
| 437-540, gnl|dasNov1|scaffold_93352 (8145-8073) | |
| 437-540, gnl|dasNov1|scaffold_93352 (8168-8073) | |
| 437-540, gnl|echTel1|scaffold_291800 (26750-26687) | |
| 437-540, gnl|echTel1|scaffold_291800 (26770-26677) | |
| 437-540, gnl|fr1|chrUn (185520237-185520210) | |
| 437-540, gnl|Hg17|chr12 (3191149-3191046) | |
| 437-540, gnl|hg17|chr3 (27640651-27640725) | |
| 437-540, gnl|hg17|chr3 (130419562-130419659) | |
| 437-540, gnl|loxAfr1|scaffold_81880 (5518-5444) | |
| 437-540, gnl|loxAfr1|scaffold_81880 (5549-5444) | |
| 437-540, gnl|Mm7|chr15 (99691863-99691762) | |
| 437-540, gnl|mm7|chr9 (114633505-114633577) | |
| 437-540, gnl|mm7|chr9 (114633485-114633577) | |
| 437-540, gnl|monDom2|scaffold_2 (74223129-74223187) | |
| 437-540, gnl|oryCun1|scaffold_166788 (7168-7073) | |
| 437-540, gnl|oryCun1|scaffold_80740 (2715-2641) | |
| 437-540, gnl|panTro1|chr2 (28574970-28575044) | |
| 437-540, gnl|panTro1|chr2_random (9036981-9036883) | |
| 437-540, gnl|rheMac2|chr11 (85623825-85623726) | |
| 437-540, gnl|rheMac2|chr2 (170021986-170022060) | |
| 437-540, gnl|rn3|chr12 (29006793-29006877) | |
| 437-540, gnl|rn3|chrUn (25450974-25451027) | |
| 437-540, gnl|tetNig1|chr8 (8006070-8006097) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) |