Non-Coding RNA Search

Ss1.1-End4-UMC-pd12_14end-006-a08.3

Sequence:


               
               ACTATACATCATAGAATTCATTCAGGAGAGAAGCCCTATGAATGTAATGAATGTGGAAAA
ACCTTCTGCCAGAATTCAGCCCTTAATAGGCATCAGAGAACACACACAGGAGAGAAAGCC
TACGAGTGTTATGAATGTGGCAAATTCTTCTCTCAGATGTCATATCTCACTATTCATCAT
AGAATTCATTCAGGAGAGAAACCTTTTGAATGTAATGAATGTGGGAAAGCCTTCTCTCGG
ATGTCATACCTTACTGTACATTATAGAACTCATTCAGGAGAGAAACCCTATGAATGTAAC
GAATGTGGGAAGAAATTCTACCACAAATCAGCCTTCAATAGCCATCAGAGAATTCACAGG
AGAGGGAATGTAAATGTAATTGATGTGGGAAGGCTTCTCTGAAGTCACAATTTATTGTCA
CAGAACCCCCTCAATATAATGAATAAAAAACTTCTCTCATCATAAGTCAGAGATTTTACC
CAGGTAAATGTGGACCAGCCTTTGAGCATGAGTCAGACTTGGAATTTGAAAGTTTGCAGG
GTAAAAACCACAGTTGTAACTAGGCCACATCACATGTGGGATACCAGACTAGGTAAGAAT
AAGATTTTATAAATTTTATTTAGAATGTACATAGTTTTCACCATGGATTCGAACTGTTTT
ACATATCAGGGAATTTATATCAAGGGAAACCTCTTAATTTAAGGAAGTGGAAAACATTCT
GTTGGAATTATTAATACTAAAATTTATGTTTCTGATAAAATATCAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTATACATCATAGAATTCATTCAGGAGAGAAGCCCTATGAATGTAATGAATGTGGAAAA
ACCTTCTGCCAGAATTCAGCCCTTAATAGGCATCAGAGAACACACACAGGAGAGAAAGCC
TACGAGTGTTATGAATGTGGCAAATTCTTCTCTCAGATGTCATATCTCACTATTCATCAT
AGAATTCATTCAGGAGAGAAACCTTTTGAATGTAATGAATGTGGGAAAGCCTTCTCTCGG
ATGTCATACCTTACTGTACATTATAGAACTCATTCAGGAGAGAAACCCTATGAATGTAAC
GAATGTGGGAAGAAATTCTACCACAAATCAGCCTTCAATAGCCATCAGAGAATTCACAGG
AGAGGGAATGTAAATGTAATTGATGTGGGAAGGCTTCTCTGAAGTCACAATTTATTGTCA
CAGAACCCCCTCAATATAATGAATAAAAAACTTCTCTCATCATAAGTCAGAGATTTTACC
CAGGTAAATGTGGACCAGCCTTTGAGCATGAGTCAGACTTGGAATTTGAAAGTTTGCAGG
GTAAAAACCACAGTTGTAACTAGGCCACATCACATGTGGGATACCAGACTAGGTAAGAAT
AAGATTTTATAAATTTTATTTAGAATGTACATAGTTTTCACCATGGATTCGAACTGTTTT
ACATATCAGGGAATTTATATCAAGGGAAACCTCTTAATTTAAGGAAGTGGAAAACATTCT
GTTGGAATTATTAATACTAAAATTTATGTTTCTGATAAAATATCAAGC

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               1-380, gnl|bosTau2|chr10 (8996285-8995911)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-380, gnl|bosTau2|chr10 (8996285-8995911)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sag (0.182715)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)