Ss1.1-End4-UMC-pd12_14end-006-a11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGATGAGGGGGAACCGACAGAGAGCAAGTCAAGCCAGAAGGAGTCCGTGATCCATCGC TCCAAGTCCTGCAAGGTCCCGGGGCTGGGCAAGCCCCTCGTGTTACCTCCCAAGCCAGAG AAATCCTCAGGGTCAGAAGGATCATCGCCTAACTGGCTGCAAGCCCTGAAGTTGAAGAAG AAGAAGGTCTGAGAAGTCACTGAGGTCCTTCCCATCTGGCAGTCTCAGGCAGTGCCCATC CCTGTGGGGTCCCCAGCGAGGAGACGGCTGAGCCCCACCATGCCCCAGGCTGCAGCCTCT GCCCCCTCCACCTCTGAGGGGCGTCTGGGGAGGCACAGTTATGCACTTTGTATCATCTTC CCAACTTCCCCCACACCTCCCCTCCCAGCCCGTCCCTAGTGGTCGAAGGTCTTGGTCCCT CCCGCCCTCCCTCGCCCTCTTCCCGCCTCCCTCTTTGCTTCCTCCCCCAGCCTCCTTGGG TTTTCTTTTGATACCAGTTTATAGCATTTTTTATAAGAGCCTTTGATTTTTGTAACGGGC CGAGCCCAGCCGCACCCCAGGTCTCCCTCCACCCTGCCAGGTGCCCCACAGAGACCGAAA ACATTTTGCCACTTGAAACAATAAAGTTTTTTGGGAATTGGAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGATGAGGGGGAACCGACAGAGAGCAAGTCAAGCCAGAAGGAGTCCGTGATCCATCGC TCCAAGTCCTGCAAGGTCCCGGGGCTGGGCAAGCCCCTCGTGTTACCTCCCAAGCCAGAG AAATCCTCAGGGTCAGAAGGATCATCGCCTAACTGGCTGCAAGCCCTGAAGTTGAAGAAG AAGAAGGTCTGAGAAGTCACTGAGGTCCTTCCCATCTGGCAGTCTCAGGCAGTGCCCATC CCTGTGGGGTCCCCAGCGAGGAGACGGCTGAGCCCCACCATGCCCCAGGCTGCAGCCTCT GCCCCCTCCACCTCTGAGGGGCGTCTGGGGAGGCACAGTTATGCACTTTGTATCATCTTC CCAACTTCCCCCACACCTCCCCTCCCAGCCCGTCCCTAGTGGTCGAAGGTCTTGGTCCCT CCCGCCCTCCCTCGCCCTCTTCCCGCCTCCCTCTTTGCTTCCTCCCCCAGCCTCCTTGGG TTTTCTTTTGATACCAGTTTATAGCATTTTTTATAAGAGCCTTTGATTTTTGTAACGGGC CGAGCCCAGCCGCACCCCAGGTCTCCCTCCACCCTGCCAGGTGCCCCACAGAGACCGAAA ACATTTTGCCACTTGAAACAATAAAGTTTTTTGGGAATTGGAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 227-343, - strand, RNAz p=0.752406 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 227-343, - strand, RNAz p=0.752406 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 1-133, gnl|bosTau2|chr15 (50757010-50756881) | |
| 1-133, gnl|canFam2|chr18 (41901859-41901595) | |
| 1-133, gnl|dasNov1|scaffold_72243 (3858-3570) | |
| 1-133, gnl|echTel1|scaffold_317200 (311-9) | |
| 1-133, gnl|hg17|chr11 (56824872-56825177) | |
| 1-133, gnl|Hg17|chr11 (56825064-56824932) | |
| 1-133, gnl|mm7|chr2 (84915647-84915355) | |
| 1-133, gnl|Mm7|chr2 (84915449-84915581) | |
| 1-133, gnl|monDom2|scaffold_33 (20358049-20358358) | |
| 1-133, gnl|oryCun1|scaffold_205513 (58708-58424) | |
| 1-133, gnl|panTro1|chr9 (57732902-57733207) | |
| 1-133, gnl|rheMac2|chr14 (16118888-16118583) | |
| 1-133, gnl|rn3|chr3 (68203501-68203212) | |
| 203-370, gnl|bosTau2|chr15 (50755975-50755819) | |
| 203-370, gnl|canFam2|chr18 (41902720-41902430) | |
| 203-370, gnl|echTel1|scaffold_317200 (1702-1444) | |
| 203-370, gnl|hg17|chr11 (56823931-56824201) | |
| 203-370, gnl|Hg17|chr11 (56824133-56823952) | |
| 203-370, gnl|loxAfr1|scaffold_121352 (1284-1003) | |
| 203-370, gnl|mm7|chr2 (84916518-84916248) | |
| 203-370, gnl|Mm7|chr2 (84916311-84916496) | |
| 203-370, gnl|monDom2|scaffold_33 (20357197-20357415) | |
| 203-370, gnl|oryCun1|scaffold_205513 (59658-59372) | |
| 203-370, gnl|panTro1|chr9 (57731961-57732231) | |
| 203-370, gnl|rheMac2|chr14 (16119829-16119558) | |
| 203-370, gnl|rn3|chr3 (68204377-68204108) | |
| 435-641, gnl|bosTau2|chr15 (50755796-50755589) | |
| 435-641, gnl|Hg17|chr11 (56823905-56823688) | |
| 435-641, gnl|Mm7|chr2 (84916537-84916760) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-133, gnl|bosTau2|chr15 (50757010-50756881) | |
| 1-133, gnl|canFam2|chr18 (41901859-41901595) | |
| 1-133, gnl|dasNov1|scaffold_72243 (3858-3570) | |
| 1-133, gnl|echTel1|scaffold_317200 (311-9) | |
| 1-133, gnl|hg17|chr11 (56824872-56825177) | |
| 1-133, gnl|Hg17|chr11 (56825064-56824932) | |
| 1-133, gnl|mm7|chr2 (84915647-84915355) | |
| 1-133, gnl|Mm7|chr2 (84915449-84915581) | |
| 1-133, gnl|monDom2|scaffold_33 (20358049-20358358) | |
| 1-133, gnl|oryCun1|scaffold_205513 (58708-58424) | |
| 1-133, gnl|panTro1|chr9 (57732902-57733207) | |
| 1-133, gnl|rheMac2|chr14 (16118888-16118583) | |
| 1-133, gnl|rn3|chr3 (68203501-68203212) | |
| 203-370, gnl|bosTau2|chr15 (50755975-50755819) | |
| 203-370, gnl|canFam2|chr18 (41902720-41902430) | |
| 203-370, gnl|echTel1|scaffold_317200 (1702-1444) | |
| 203-370, gnl|hg17|chr11 (56823931-56824201) | |
| 203-370, gnl|Hg17|chr11 (56824133-56823952) | |
| 203-370, gnl|loxAfr1|scaffold_121352 (1284-1003) | |
| 203-370, gnl|mm7|chr2 (84916518-84916248) | |
| 203-370, gnl|Mm7|chr2 (84916311-84916496) | |
| 203-370, gnl|monDom2|scaffold_33 (20357197-20357415) | |
| 203-370, gnl|oryCun1|scaffold_205513 (59658-59372) | |
| 203-370, gnl|panTro1|chr9 (57731961-57732231) | |
| 203-370, gnl|rheMac2|chr14 (16119829-16119558) | |
| 203-370, gnl|rn3|chr3 (68204377-68204108) | |
| 435-641, gnl|bosTau2|chr15 (50755796-50755589) | |
| 435-641, gnl|Hg17|chr11 (56823905-56823688) | |
| 435-641, gnl|Mm7|chr2 (84916537-84916760) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| col (0.195008) | |
| cli (0.152812) | |
| nca (0.136874) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| nbm (0.0993246) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| cli (0.152812) | |
| nca (0.136874) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| nbm (0.0993246) |