Ss1.1-End4-UMC-pd12_14end-006-e02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAGCCGAGATGGGACCCCCTCACCACCATCCCGGCCACCGCATGCCTCACCCTGGGAT CAACGAGCACCCACCTTGGGGCGGGCCCCAGCACCCTGACTTCGGTCCTCCTCCCCACGG CTTCAACGGACAGCCCCCTCACATGCGGCGACAGGGCCCTCCCCACATCAACCATGACGA CCCCAGCCTGGTCCCCAATGTGCCCTACTTCGATCTCCCTGCCGGGCTGATGGCCCCCCT CGTGAAGCTGGAAGACCATGAGTACAAGCCTTTGGATCCTAAAGACATCCGCCTGCCACC TCCTATGCCACCCAGCGAGAGGCTGCTGGCGGCTGTGGAGGCCTTCTACAGCCCACCCTC CCATGACAGGCCCCAGAACAGTGAAGGCTGGGAGCAGAACGGCCTCTATGAGTTCTTCCG AGCAAAAATGCGGGCCCGCAGGAGGAAAGGCCAGGAGAAGAGGAACAGCGGACCCTCGAG GTCTCGGAGCAGATCCAAAAGCCGAGGGCGATCTTCCTCCCGCTCCAACTCGAGGTCCTC CAAGTCGTCTGGTTCGTACTCCAGGTCAAGGTCTCGTTCCTGCTCCCGCTCCTACTCCCG CTCCCGATCCAGGAGCCGCAGCCGCTCCCGCTCTTCACGAGGCGGGGGCCGCTCCCGCTC TCGCTCCCGCTCCAAGTCCTATTCCCCAGGAAGGAGACGTCGATCACGGTCCCGGAGCCC CACCCCGCCTTCCTCGGCTGGTCTGGGTTCTAATTCAGCACCTCCCATACCTGACTCAAG GCTCGGGGAAGAGAACAAAGGACATCAGATGCTGGTGAAAATGGGCTGGAGTGGATCCGG TGGCCTTGGCGCGAAAGAGCAAGGGATCCAGGACCCCATCAAGGGCGGGGACGTCCGGGA TAAGTGGGACCAGTACAAGGGTGTGGGCGTGGCTCTGGATGACCCCTACGAGAACTACCG CAGGAACAAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAGCCGAGATGGGACCCCCTCACCACCATCCCGGCCACCGCATGCCTCACCCTGGGAT CAACGAGCACCCACCTTGGGGCGGGCCCCAGCACCCTGACTTCGGTCCTCCTCCCCACGG CTTCAACGGACAGCCCCCTCACATGCGGCGACAGGGCCCTCCCCACATCAACCATGACGA CCCCAGCCTGGTCCCCAATGTGCCCTACTTCGATCTCCCTGCCGGGCTGATGGCCCCCCT CGTGAAGCTGGAAGACCATGAGTACAAGCCTTTGGATCCTAAAGACATCCGCCTGCCACC TCCTATGCCACCCAGCGAGAGGCTGCTGGCGGCTGTGGAGGCCTTCTACAGCCCACCCTC CCATGACAGGCCCCAGAACAGTGAAGGCTGGGAGCAGAACGGCCTCTATGAGTTCTTCCG AGCAAAAATGCGGGCCCGCAGGAGGAAAGGCCAGGAGAAGAGGAACAGCGGACCCTCGAG GTCTCGGAGCAGATCCAAAAGCCGAGGGCGATCTTCCTCCCGCTCCAACTCGAGGTCCTC CAAGTCGTCTGGTTCGTACTCCAGGTCAAGGTCTCGTTCCTGCTCCCGCTCCTACTCCCG CTCCCGATCCAGGAGCCGCAGCCGCTCCCGCTCTTCACGAGGCGGGGGCCGCTCCCGCTC TCGCTCCCGCTCCAAGTCCTATTCCCCAGGAAGGAGACGTCGATCACGGTCCCGGAGCCC CACCCCGCCTTCCTCGGCTGGTCTGGGTTCTAATTCAGCACCTCCCATACCTGACTCAAG GCTCGGGGAAGAGAACAAAGGACATCAGATGCTGGTGAAAATGGGCTGGAGTGGATCCGG TGGCCTTGGCGCGAAAGAGCAAGGGATCCAGGACCCCATCAAGGGCGGGGACGTCCGGGA TAAGTGGGACCAGTACAAGGGTGTGGGCGTGGCTCTGGATGACCCCTACGAGAACTACCG CAGGAACAAGAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 5-247, gnl|bosTau2|chr7 (5756255-5756013) | |
| 5-247, gnl|canFam2|chr20 (49018615-49018409) | |
| 5-247, gnl|danRer3|chr25 (4439449-4439246) | |
| 5-247, gnl|echTel1|scaffold_55860 (534-335) | |
| 5-247, gnl|fr1|chrUn (268274352-268274558) | |
| 5-247, gnl|galGal2|chr28 (3616770-3616564) | |
| 5-247, gnl|hg17|chr19 (16494860-16495066) | |
| 5-247, gnl|Hg17|chr19 (16495105-16494863) | |
| 5-247, gnl|loxAfr1|scaffold_8232 (43434-43229) | |
| 5-247, gnl|mm7|chr8 (70985955-70986161) | |
| 5-247, gnl|Mm7|chr8 (70986200-70985958) | |
| 5-247, gnl|monDom2|scaffold_100 (3098825-3099031) | |
| 5-247, gnl|panTro1|chr20 (17180947-17181153) | |
| 5-247, gnl|rheMac2|chr19 (16069268-16069474) | |
| 5-247, gnl|rn3|chr16 (17795747-17795541) | |
| 5-247, gnl|tetNig1|chrUn_random (49768829-49769031) | |
| 5-247, gnl|xenTro1|scaffold_1177 (34573-34367) | |
| 389-613, gnl|bosTau2|chr7 (5754171-5753947) | |
| 824-972, gnl|bosTau2|chr7 (5752894-5752746) | |
| 824-972, gnl|canFam2|chr20 (49022172-49021920) | |
| 824-972, gnl|danRer3|chr22 (4300445-4300244) | |
| 824-972, gnl|echTel1|scaffold_185662 (4223-3995) | |
| 824-972, gnl|fr1|chrUn (268272258-268272459) | |
| 824-972, gnl|galGal2|chr28 (3619698-3619492) | |
| 824-972, gnl|hg17|chr19 (16490957-16491206) | |
| 824-972, gnl|Hg17|chr19 (16491164-16491016) | |
| 824-972, gnl|loxAfr1|scaffold_8232 (46400-46175) | |
| 824-972, gnl|mm7|chr8 (70984308-70984540) | |
| 824-972, gnl|Mm7|chr8 (70984502-70984354) | |
| 824-972, gnl|monDom2|scaffold_100 (3089386-3089590) | |
| 824-972, gnl|panTro1|chr20 (17177062-17177311) | |
| 824-972, gnl|rheMac2|chr19 (16065746-16065997) | |
| 824-972, gnl|rn3|chr16 (17797437-17797216) | |
| 824-972, gnl|tetNig1|chrUn_random (49767076-49767303) | |
| 824-972, gnl|xenTro1|scaffold_1177 (39282-39074) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-247, gnl|bosTau2|chr7 (5756255-5756013) | |
| 5-247, gnl|canFam2|chr20 (49018615-49018409) | |
| 5-247, gnl|danRer3|chr25 (4439449-4439246) | |
| 5-247, gnl|echTel1|scaffold_55860 (534-335) | |
| 5-247, gnl|fr1|chrUn (268274352-268274558) | |
| 5-247, gnl|galGal2|chr28 (3616770-3616564) | |
| 5-247, gnl|hg17|chr19 (16494860-16495066) | |
| 5-247, gnl|Hg17|chr19 (16495105-16494863) | |
| 5-247, gnl|loxAfr1|scaffold_8232 (43434-43229) | |
| 5-247, gnl|mm7|chr8 (70985955-70986161) | |
| 5-247, gnl|Mm7|chr8 (70986200-70985958) | |
| 5-247, gnl|monDom2|scaffold_100 (3098825-3099031) | |
| 5-247, gnl|panTro1|chr20 (17180947-17181153) | |
| 5-247, gnl|rheMac2|chr19 (16069268-16069474) | |
| 5-247, gnl|rn3|chr16 (17795747-17795541) | |
| 5-247, gnl|tetNig1|chrUn_random (49768829-49769031) | |
| 5-247, gnl|xenTro1|scaffold_1177 (34573-34367) | |
| 389-613, gnl|bosTau2|chr7 (5754171-5753947) | |
| 824-972, gnl|bosTau2|chr7 (5752894-5752746) | |
| 824-972, gnl|canFam2|chr20 (49022172-49021920) | |
| 824-972, gnl|danRer3|chr22 (4300445-4300244) | |
| 824-972, gnl|echTel1|scaffold_185662 (4223-3995) | |
| 824-972, gnl|fr1|chrUn (268272258-268272459) | |
| 824-972, gnl|galGal2|chr28 (3619698-3619492) | |
| 824-972, gnl|hg17|chr19 (16490957-16491206) | |
| 824-972, gnl|Hg17|chr19 (16491164-16491016) | |
| 824-972, gnl|loxAfr1|scaffold_8232 (46400-46175) | |
| 824-972, gnl|mm7|chr8 (70984308-70984540) | |
| 824-972, gnl|Mm7|chr8 (70984502-70984354) | |
| 824-972, gnl|monDom2|scaffold_100 (3089386-3089590) | |
| 824-972, gnl|panTro1|chr20 (17177062-17177311) | |
| 824-972, gnl|rheMac2|chr19 (16065746-16065997) | |
| 824-972, gnl|rn3|chr16 (17797437-17797216) | |
| 824-972, gnl|tetNig1|chrUn_random (49767076-49767303) | |
| 824-972, gnl|xenTro1|scaffold_1177 (39282-39074) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| nmm (0.132802) | |
| jej (0.0989218) |