Non-Coding RNA Search

Ss1.1-Fat1-C94729.5

Sequence:


               
               GTGTGTTCTAACCCATCTCGAAGGTGGGAAAAGGGGCAAGAAAGTGAAGAATTGATCTTT
GAATAATTATCTCTAAGTCCAGCTGATAGAAGGCTCCATGGGTTCTCATGAAATTGGATG
TGTTGGCTATGGCATATTTAAATTTTTTTCAAAAAAGCAAGGCCCTGCAAAGACTATTAT
TACATTACTCTTCAGCTTGCCTAGATTATGCTAACAGTTTTTGAGAAAGATACACTTGAA
CTCTGAAAGAACCAACCCAGGAAGCTCTTCTCTGTTCCATGCTGGTCTAGATACTTTAGG
TACCAATTGGCTCTTAACCAAATTTTCCTTTTATATATATATATTTGTACTTTACTATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGTTCTAACCCATCTCGAAGGTGGGAAAAGGGGCAAGAAAGTGAAGAATTGATCTTT
GAATAATTATCTCTAAGTCCAGCTGATAGAAGGCTCCATGGGTTCTCATGAAATTGGATG
TGTTGGCTATGGCATATTTAAATTTTTTTCAAAAAAGCAAGGCCCTGCAAAGACTATTAT
TACATTACTCTTCAGCTTGCCTAGATTATGCTAACAGTTTTTGAGAAAGATACACTTGAA
CTCTGAAAGAACCAACCCAGGAAGCTCTTCTCTGTTCCATGCTGGTCTAGATACTTTAGG
TACCAATTGGCTCTTAACCAAATTTTCCTTTTATATATATATATTTGTACTTTACTATGA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               4-360, gnl|bosTau2|chr6 (30038747-30038372)
               

               
               4-360, gnl|canFam2|chr3 (76454432-76454096)
               

               
               4-360, gnl|dasNov1|scaffold_7523 (98147-98603)
               

               
               4-360, gnl|echTel1|scaffold_159117 (3570-3235)
               

               
               4-360, gnl|hg17|chr4 (38523567-38523920)
               

               
               4-360, gnl|Hg17|chr4 (38523673-38524030)
               

               
               4-360, gnl|loxAfr1|scaffold_3016 (34991-35344)
               

               
               4-360, gnl|mm7|chr5 (64186066-64186325)
               

               
               4-360, gnl|monDom2|scaffold_26 (3704563-3704872)
               

               
               4-360, gnl|oryCun1|scaffold_213608 (256427-256734)
               

               
               4-360, gnl|panTro1|chr3 (41198373-41198725)
               

               
               4-360, gnl|rheMac2|chr5 (33679526-33679879)
               

               
               4-360, gnl|rn3|chr14 (46207627-46207384)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-360, gnl|bosTau2|chr6 (30038747-30038372)
               

               
               4-360, gnl|canFam2|chr3 (76454432-76454096)
               

               
               4-360, gnl|dasNov1|scaffold_7523 (98147-98603)
               

               
               4-360, gnl|echTel1|scaffold_159117 (3570-3235)
               

               
               4-360, gnl|hg17|chr4 (38523567-38523920)
               

               
               4-360, gnl|Hg17|chr4 (38523673-38524030)
               

               
               4-360, gnl|loxAfr1|scaffold_3016 (34991-35344)
               

               
               4-360, gnl|mm7|chr5 (64186066-64186325)
               

               
               4-360, gnl|monDom2|scaffold_26 (3704563-3704872)
               

               
               4-360, gnl|oryCun1|scaffold_213608 (256427-256734)
               

               
               4-360, gnl|panTro1|chr3 (41198373-41198725)
               

               
               4-360, gnl|rheMac2|chr5 (33679526-33679879)
               

               
               4-360, gnl|rn3|chr14 (46207627-46207384)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	4-360, gnl\|bosTau2\|chr6 (30038747-30038372)
	4-360, gnl\|canFam2\|chr3 (76454432-76454096)
	4-360, gnl\|dasNov1\|scaffold_7523 (98147-98603)
	4-360, gnl\|echTel1\|scaffold_159117 (3570-3235)
	4-360, gnl\|hg17\|chr4 (38523567-38523920)
	4-360, gnl\|Hg17\|chr4 (38523673-38524030)
	4-360, gnl\|loxAfr1\|scaffold_3016 (34991-35344)
	4-360, gnl\|mm7\|chr5 (64186066-64186325)
	4-360, gnl\|monDom2\|scaffold_26 (3704563-3704872)
	4-360, gnl\|oryCun1\|scaffold_213608 (256427-256734)
	4-360, gnl\|panTro1\|chr3 (41198373-41198725)
	4-360, gnl\|rheMac2\|chr5 (33679526-33679879)
	4-360, gnl\|rn3\|chr14 (46207627-46207384)