Non-Coding RNA Search

Ss1.1-Fat1-PT24C11.5

Sequence:


               
               GTATCATCACAGTAGACTCTGACCAATGCAACTGTTATCTCCAGATAATCCACGTTTAAA
AATAGCCTTGACTAGATGCTGAATTGTATTTCCCATTATTAATTGTCGGCTTAAAAACTT
TTGTAAACTTTTCTTAATTTGAAATTCAGTCATACCCATGTAATTTTCCAATTCAATTTC
TGTGGACATATTTTTCTTTTCACCAAGAGAAACAAAGAGATGCATCTTCACATCTTCCTC
CGTGAATATTTAAAATGCGGAATTGCTTCTCTCTTGTGTTTCTGTGTTCAGATACGTAGC
TCTGTTGTATATATTAGTTTAGACATTCTCACTAATCTACACAGTATTTAAGACTCTAAA
TGAGATTTCTTAAGTATTTTATTTTATTCTCTATAAATGGTTTTGTATAATCTTGAAAAA
TCTACACTTTGCCTTTGTAGATATTTAAGGGAAACCATTTGGGGGTTGTCTTGCATGTAT
ATTTTTGTTGTAGAGAAGTGTTGCTTAGTTATTTCTGCAAATTTTGGTTGAAATGCTTAC
CGACTTTAATACAGTATATATTTTCAGAATATAAACTTTTATATTTCTGTGGTAAGTTAG
GATATGCGTTTTAGGCAATCTTTTCCATGAAGATCATGTGTTCTTTCAAAAAAAAAAAAA
AATAGCATTCTGGTTTGGTGCCAATGGTTTTTTGTTTTTTGTTTTCCATGAGAATCTAGT
GCTCTTATATTGTTCGAGAGCCGATTAATTTCCTTTTTCTCAACGTAATTGAGTTCAAAG
AATAATTTTACAATGTATTGAATCTGTGAATAAGCCTTACCATTAGGATCGGTAACGTTT
CCAACCTTTGCAACTCCTTCCGTAGTTTAAGATCTCCCCATAAATTCTCACTGTGTGGCA
GTTGATGGAGTTTGTGAACAGAGCCTTAAGCTTGTTGCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATCATCACAGTAGACTCTGACCAATGCAACTGTTATCTCCAGATAATCCACGTTTAAA
AATAGCCTTGACTAGATGCTGAATTGTATTTCCCATTATTAATTGTCGGCTTAAAAACTT
TTGTAAACTTTTCTTAATTTGAAATTCAGTCATACCCATGTAATTTTCCAATTCAATTTC
TGTGGACATATTTTTCTTTTCACCAAGAGAAACAAAGAGATGCATCTTCACATCTTCCTC
CGTGAATATTTAAAATGCGGAATTGCTTCTCTCTTGTGTTTCTGTGTTCAGATACGTAGC
TCTGTTGTATATATTAGTTTAGACATTCTCACTAATCTACACAGTATTTAAGACTCTAAA
TGAGATTTCTTAAGTATTTTATTTTATTCTCTATAAATGGTTTTGTATAATCTTGAAAAA
TCTACACTTTGCCTTTGTAGATATTTAAGGGAAACCATTTGGGGGTTGTCTTGCATGTAT
ATTTTTGTTGTAGAGAAGTGTTGCTTAGTTATTTCTGCAAATTTTGGTTGAAATGCTTAC
CGACTTTAATACAGTATATATTTTCAGAATATAAACTTTTATATTTCTGTGGTAAGTTAG
GATATGCGTTTTAGGCAATCTTTTCCATGAAGATCATGTGTTCTTTCAAAAAAAAAAAAA
AATAGCATTCTGGTTTGGTGCCAATGGTTTTTTGTTTTTTGTTTTCCATGAGAATCTAGT
GCTCTTATATTGTTCGAGAGCCGATTAATTTCCTTTTTCTCAACGTAATTGAGTTCAAAG
AATAATTTTACAATGTATTGAATCTGTGAATAAGCCTTACCATTAGGATCGGTAACGTTT
CCAACCTTTGCAACTCCTTCCGTAGTTTAAGATCTCCCCATAAATTCTCACTGTGTGGCA
GTTGATGGAGTTTGTGAACAGAGCCTTAAGCTTGTTGCAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               251-370, - strand, RNAz p=0.7485
               

               
               836-948, - strand, RNAz p=0.538022

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-370, - strand, RNAz p=0.7485
               

               
               836-948, - strand, RNAz p=0.538022

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-948, gnl|bosTau2|chr18 (5585232-5584312)
               

               
               3-948, gnl|Hg17|chr16 (79192312-79191407)
               

               
               3-948, gnl|Mm7|chr8 (115183564-115182525)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-948, gnl|bosTau2|chr18 (5585232-5584312)
               

               
               3-948, gnl|Hg17|chr16 (79192312-79191407)
               

               
               3-948, gnl|Mm7|chr8 (115183564-115182525)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	251-370, - strand, RNAz p=0.7485
	836-948, - strand, RNAz p=0.538022

	3-948, gnl\|bosTau2\|chr18 (5585232-5584312)
	3-948, gnl\|Hg17\|chr16 (79192312-79191407)
	3-948, gnl\|Mm7\|chr8 (115183564-115182525)