Non-Coding RNA Search

Ss1.1-Fet1-UMC-pd20fet-006-h12.3

Sequence:


               
               TCCTGAGTGAGAGAAGCGAGTGTTTTTCTCCTGCCACCCCTCCCCTCTGTGTCCAAAGGC
AGGCTCCCCTCTGCACACTCACGTGTAACTCAGCGCTGCAGAGCCCCAGCGCAGCTCCGG
GAGCAGGTCCTGGGAGCGGGGTTCGAAGGAAGAGCTGGGGCAGAGGAGGTAGAGGCAGGG
GCAGCCCGGCAAACCCTGCCCTTGACTTGCTCACCCAATGCCAAGGTCACAGGGCTACTC
AGAGCAAGGGACCGGGCGGGGCTGTGTGCCCTCTGGGAAGAGGTGGTGGCAGGGTGACCG
AGAACTCCCTGTGTGGGGAGGGACCCACCAGGGAATGTCTTGAGTGGCCAGGGATGATAA
CCAAAAACAGAAGTAAACCAACGAGAAGACAGAATATATAATTACCTTTTTCTGAAAGGT
CCAAGAAATAAATCTCTAAGCAACGATGGAAAACTGGAGGTGGTGATGGAGGGGGAAGGG
GGGCTCCATTATCTTTTAGAAGCTTCCTCCAAATGCTCAGTACTGGGACCAAGTAAATAG
AGGTAGATTTTAATAAGGTGGTTTTGTTTTGTTTTTGTTCTTACTAAGGTGCTGATGTAC
ATGTAATGTCTAAAAAAAAAAAAGTTATTTGTAAATAAGTTTTTACAATACTTCAGATAT
CACTGGGTCTACTATCTGTAAAAAAAATATATATACATATAAATATATATATACCGTTTG
TTTAAAATAGAGTATTTTTATTTCATTCCTTAACTCATCATCCCAGCAGTGGTATTTGCA
CTTCAGAGGACATCGAATTACTAATTTGTACTGGATGACCTACGGCAACTTCCCCCATTT
TCTTCAGATTTTTCTAGTTATCTGTTTTTACTTTGTACATTGAGCATCGCTTATTTCCTT
TTAAGAAATGTACAGAACTGAAGTGTAGAAATGAAGTGATGTTGACCTACCACTTTTAAA
GAAAAACAAAAAAACAAATAAAAGATCATTATCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGAGTGAGAGAAGCGAGTGTTTTTCTCCTGCCACCCCTCCCCTCTGTGTCCAAAGGC
AGGCTCCCCTCTGCACACTCACGTGTAACTCAGCGCTGCAGAGCCCCAGCGCAGCTCCGG
GAGCAGGTCCTGGGAGCGGGGTTCGAAGGAAGAGCTGGGGCAGAGGAGGTAGAGGCAGGG
GCAGCCCGGCAAACCCTGCCCTTGACTTGCTCACCCAATGCCAAGGTCACAGGGCTACTC
AGAGCAAGGGACCGGGCGGGGCTGTGTGCCCTCTGGGAAGAGGTGGTGGCAGGGTGACCG
AGAACTCCCTGTGTGGGGAGGGACCCACCAGGGAATGTCTTGAGTGGCCAGGGATGATAA
CCAAAAACAGAAGTAAACCAACGAGAAGACAGAATATATAATTACCTTTTTCTGAAAGGT
CCAAGAAATAAATCTCTAAGCAACGATGGAAAACTGGAGGTGGTGATGGAGGGGGAAGGG
GGGCTCCATTATCTTTTAGAAGCTTCCTCCAAATGCTCAGTACTGGGACCAAGTAAATAG
AGGTAGATTTTAATAAGGTGGTTTTGTTTTGTTTTTGTTCTTACTAAGGTGCTGATGTAC
ATGTAATGTCTAAAAAAAAAAAAGTTATTTGTAAATAAGTTTTTACAATACTTCAGATAT
CACTGGGTCTACTATCTGTAAAAAAAATATATATACATATAAATATATATATACCGTTTG
TTTAAAATAGAGTATTTTTATTTCATTCCTTAACTCATCATCCCAGCAGTGGTATTTGCA
CTTCAGAGGACATCGAATTACTAATTTGTACTGGATGACCTACGGCAACTTCCCCCATTT
TCTTCAGATTTTTCTAGTTATCTGTTTTTACTTTGTACATTGAGCATCGCTTATTTCCTT
TTAAGAAATGTACAGAACTGAAGTGTAGAAATGAAGTGATGTTGACCTACCACTTTTAAA
GAAAAACAAAAAAACAAATAAAAGATCATTATCTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               254-403, + strand, RNAz p=0.999896

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-403, + strand, RNAz p=0.999896

Similar Transcript(s): 1 entry(ies)

More info

Similar Transcript(s): 1 entry(ies)

Help | Less info


               
               254-403, BP168422 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP168422.1|), blast E-value=0, identity=99.33%

Similar Transcript(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               254-403, BP168422 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP168422.1|), blast E-value=0, identity=99.33%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               254-996, gnl|bosTau2|chr17 (12464095-12464838)
               

               
               254-996, gnl|Hg17|chr4 (140996256-140995517)
               

               
               254-996, gnl|Mm7|chr3 (51812680-51811955)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               254-996, gnl|bosTau2|chr17 (12464095-12464838)
               

               
               254-996, gnl|Hg17|chr4 (140996256-140995517)
               

               
               254-996, gnl|Mm7|chr3 (51812680-51811955)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               hea (0.204499)
               

               
               lyg (0.133103)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               lyg (0.133103)
               

               
               spc (0.113366)

	254-996, gnl\|bosTau2\|chr17 (12464095-12464838)
	254-996, gnl\|Hg17\|chr4 (140996256-140995517)
	254-996, gnl\|Mm7\|chr3 (51812680-51811955)