Non-Coding RNA Search

Ss1.1-Fet1-UMC-pd20fet-016-h10.3

Sequence:


               
               ACTTATTACATGTTAAATTAAATCAAGGAGTCTGATTGCAGGAAGGGAAGAGCATGTAAG
AAATGTTTTTTTAAAGCGTTATTTTGTATAAATGGGAAGAAAGATTCAGTTAAGTTATTA
ACATTTGGGACCTGGATAATTATATCAGAGTATAAGTCAATCCAATAAATTATTTAACTA
ATTAAAAAATAGTTGCGAAGCATTTGAGCTGTGGTTGAGGAAGTGGTGTAAAGTGCATCT
CTTAGGAATGAAGCACTTTCATTAGGATGGAATCGTGTCTGATTAGAATGTCAGTTGATC
CACTAGATTTGTGTCCACACTACCAGTTTCACGCCCCCTTTCCATCTGTTTGATACAGTA
TTATAGATATAAATATATATATATTTCTCTGTGGCCATTTGTGATACTTCCTCATATACT
TGAATATAATACTTCCTTATTCACAGTATCTGTGTCTCCTGCACCCTTTGGTGTTGCCAT
TTTAGGTATGTGAAAGTAGATGTTAGCAGGGTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTATTACATGTTAAATTAAATCAAGGAGTCTGATTGCAGGAAGGGAAGAGCATGTAAG
AAATGTTTTTTTAAAGCGTTATTTTGTATAAATGGGAAGAAAGATTCAGTTAAGTTATTA
ACATTTGGGACCTGGATAATTATATCAGAGTATAAGTCAATCCAATAAATTATTTAACTA
ATTAAAAAATAGTTGCGAAGCATTTGAGCTGTGGTTGAGGAAGTGGTGTAAAGTGCATCT
CTTAGGAATGAAGCACTTTCATTAGGATGGAATCGTGTCTGATTAGAATGTCAGTTGATC
CACTAGATTTGTGTCCACACTACCAGTTTCACGCCCCCTTTCCATCTGTTTGATACAGTA
TTATAGATATAAATATATATATATTTCTCTGTGGCCATTTGTGATACTTCCTCATATACT
TGAATATAATACTTCCTTATTCACAGTATCTGTGTCTCCTGCACCCTTTGGTGTTGCCAT
TTTAGGTATGTGAAAGTAGATGTTAGCAGGGTTCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-433, - strand, RNAz p=0.936317

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-433, - strand, RNAz p=0.936317

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-514, gnl|bosTau2|chr2 (54258370-54257864)
               

               
               1-514, gnl|Hg17|chr2 (210421032-210421546)
               

               
               1-514, gnl|Mm7|chr1 (66679119-66679630)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-514, gnl|bosTau2|chr2 (54258370-54257864)
               

               
               1-514, gnl|Hg17|chr2 (210421032-210421546)
               

               
               1-514, gnl|Mm7|chr1 (66679119-66679630)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mga (0.160205)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)

	1-514, gnl\|bosTau2\|chr2 (54258370-54257864)
	1-514, gnl\|Hg17\|chr2 (210421032-210421546)
	1-514, gnl\|Mm7\|chr1 (66679119-66679630)