Non-Coding RNA Search

Ss1.1-Liv1-LVR010001C05.5

Sequence:


               
               TGGGAAGGTGGGCGTGGTAAGCGTTGATTGGCAGGGGTGGGGCCAGGCTCGTCACCCTCC
CCCTCCTCCACCCGGGTTCCTCCAACCCCTGGGCTGGCTGGGGTACAGCCAGGGCGAGGG
CTCGAGCGCTGGGCCGAGTCGCCAGTCCCCTCCTCCCCAGCTCCTCTACCCGCGTTCCGG
GGCTGGAGGCGCTGGAGAAGTTGGGCAGCGCCCGGGCCGGCTCTGGGCGCTGACAGTCGG
CAAAGTTTGGCCCGAAGAGGAAGTGGCCTCAAGCCTCGGCAGGTGGCGGCCAGGCCTGGA
CCCGGACGTTCGCGGCCTGCGGGCGGGCTCTAGGCGAGGGCGCGCCCCAGCGCTGGACTT
CGAGCCAACTCCCTGGGCTTCGGGGGTCAGCCTCTGGAGAGAGCGCTGCGGCGGCCGGGG
AGAACAACTCCAAAGTTGGCGAGAGGCACCGCCCCGGTTCCCGGGCCGCCGCCGCCCCCC
ACCAGCCCCCAGCCCTGGCATCCGGAGCCTCGGTCGAGGAGTCTGGGCCATGGAGCCCCC
TCGGGGAGGCGGCACTGAGGAGCCAGGATACCCGGAGTGGCGCCGCCTCCCCACTGGGTA
GACGATCGAAGCTCCGGGACTCTTCCTGCGCCTCGGGACGGCTCACGATGCTGCCGGCCA
TCCTTCTCCTCCTGGGAGGCGCTCTGGCCCACCAAGACCGGATCCTTTTCCCAAATCATG
CCTGTGAGGACCCCCCAGCAGTGCTTTTGGAAGTGCAGGGCACCATACAGAGGCCCCTGG
GCCGGGACAGCCGCATCTCCCCTGCCAACTGCACCTGGCTCATCCTGGGCAGCAAGGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGAAGGTGGGCGTGGTAAGCGTTGATTGGCAGGGGTGGGGCCAGGCTCGTCACCCTCC
CCCTCCTCCACCCGGGTTCCTCCAACCCCTGGGCTGGCTGGGGTACAGCCAGGGCGAGGG
CTCGAGCGCTGGGCCGAGTCGCCAGTCCCCTCCTCCCCAGCTCCTCTACCCGCGTTCCGG
GGCTGGAGGCGCTGGAGAAGTTGGGCAGCGCCCGGGCCGGCTCTGGGCGCTGACAGTCGG
CAAAGTTTGGCCCGAAGAGGAAGTGGCCTCAAGCCTCGGCAGGTGGCGGCCAGGCCTGGA
CCCGGACGTTCGCGGCCTGCGGGCGGGCTCTAGGCGAGGGCGCGCCCCAGCGCTGGACTT
CGAGCCAACTCCCTGGGCTTCGGGGGTCAGCCTCTGGAGAGAGCGCTGCGGCGGCCGGGG
AGAACAACTCCAAAGTTGGCGAGAGGCACCGCCCCGGTTCCCGGGCCGCCGCCGCCCCCC
ACCAGCCCCCAGCCCTGGCATCCGGAGCCTCGGTCGAGGAGTCTGGGCCATGGAGCCCCC
TCGGGGAGGCGGCACTGAGGAGCCAGGATACCCGGAGTGGCGCCGCCTCCCCACTGGGTA
GACGATCGAAGCTCCGGGACTCTTCCTGCGCCTCGGGACGGCTCACGATGCTGCCGGCCA
TCCTTCTCCTCCTGGGAGGCGCTCTGGCCCACCAAGACCGGATCCTTTTCCCAAATCATG
CCTGTGAGGACCCCCCAGCAGTGCTTTTGGAAGTGCAGGGCACCATACAGAGGCCCCTGG
GCCGGGACAGCCGCATCTCCCCTGCCAACTGCACCTGGCTCATCCTGGGCAGCAAGGAGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               358-474, + strand, RNAz p=0.898434
               

               
               515-633, - strand, RNAz p=0.794869

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-474, + strand, RNAz p=0.898434
               

               
               515-633, - strand, RNAz p=0.794869

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               552-659, - strand, RNAmicro p=0.995703

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               552-659, - strand, RNAmicro p=0.995703

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AY358399, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY358399, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               2-671, gnl|bosTau2|chr10 (14146477-14145811)
               

               
               2-671, gnl|Hg17|chr14 (22410735-22411379)
               


               
               720-840, gnl|bosTau2|chr10 (14144863-14144743)
               

               
               720-840, gnl|canFam2|chr8 (6212926-6213058)
               

               
               720-840, gnl|danRer3|chr19 (38936254-38936140)
               

               
               720-840, gnl|dasNov1|scaffold_16655 (5790-5919)
               

               
               720-840, gnl|echTel1|scaffold_170716 (2827-2695)
               

               
               720-840, gnl|hg17|chr14 (22412341-22412470)
               

               
               720-840, gnl|Hg17|chr14 (22412359-22412479)
               

               
               720-840, gnl|loxAfr1|scaffold_79380 (9398-9527)
               

               
               720-840, gnl|mm7|chr14 (49333060-49333192)
               

               
               720-840, gnl|Mm7|chr14 (49333081-49333201)
               

               
               720-840, gnl|monDom2|scaffold_12 (26982831-26982707)
               

               
               720-840, gnl|oryCun1|scaffold_135819 (3904-4033)
               

               
               720-840, gnl|rheMac2|chr7 (85687637-85687766)
               

               
               720-840, gnl|rn3|chr15 (32544653-32544782)
               

               
               720-840, gnl|xenTro1|scaffold_3 (4849542-4849671)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-671, gnl|bosTau2|chr10 (14146477-14145811)
               

               
               2-671, gnl|Hg17|chr14 (22410735-22411379)
               


               
               720-840, gnl|bosTau2|chr10 (14144863-14144743)
               

               
               720-840, gnl|canFam2|chr8 (6212926-6213058)
               

               
               720-840, gnl|danRer3|chr19 (38936254-38936140)
               

               
               720-840, gnl|dasNov1|scaffold_16655 (5790-5919)
               

               
               720-840, gnl|echTel1|scaffold_170716 (2827-2695)
               

               
               720-840, gnl|hg17|chr14 (22412341-22412470)
               

               
               720-840, gnl|Hg17|chr14 (22412359-22412479)
               

               
               720-840, gnl|loxAfr1|scaffold_79380 (9398-9527)
               

               
               720-840, gnl|mm7|chr14 (49333060-49333192)
               

               
               720-840, gnl|Mm7|chr14 (49333081-49333201)
               

               
               720-840, gnl|monDom2|scaffold_12 (26982831-26982707)
               

               
               720-840, gnl|oryCun1|scaffold_135819 (3904-4033)
               

               
               720-840, gnl|rheMac2|chr7 (85687637-85687766)
               

               
               720-840, gnl|rn3|chr15 (32544653-32544782)
               

               
               720-840, gnl|xenTro1|scaffold_3 (4849542-4849671)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               nbm (0.0993246)

	358-474, + strand, RNAz p=0.898434
	515-633, - strand, RNAz p=0.794869

	2-671, gnl\|bosTau2\|chr10 (14146477-14145811)
	2-671, gnl\|Hg17\|chr14 (22410735-22411379)

	720-840, gnl\|bosTau2\|chr10 (14144863-14144743)
	720-840, gnl\|canFam2\|chr8 (6212926-6213058)
	720-840, gnl\|danRer3\|chr19 (38936254-38936140)
	720-840, gnl\|dasNov1\|scaffold_16655 (5790-5919)
	720-840, gnl\|echTel1\|scaffold_170716 (2827-2695)
	720-840, gnl\|hg17\|chr14 (22412341-22412470)
	720-840, gnl\|Hg17\|chr14 (22412359-22412479)
	720-840, gnl\|loxAfr1\|scaffold_79380 (9398-9527)
	720-840, gnl\|mm7\|chr14 (49333060-49333192)
	720-840, gnl\|Mm7\|chr14 (49333081-49333201)
	720-840, gnl\|monDom2\|scaffold_12 (26982831-26982707)
	720-840, gnl\|oryCun1\|scaffold_135819 (3904-4033)
	720-840, gnl\|rheMac2\|chr7 (85687637-85687766)
	720-840, gnl\|rn3\|chr15 (32544653-32544782)
	720-840, gnl\|xenTro1\|scaffold_3 (4849542-4849671)