Ss1.1-Liv1-LVR010001D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGCCTTCAGCGAGCTGGGGACCGGAGAATGAGATGGCTGCGGCGGGGAAGGAGTGCGC GTGCGCGCTGGCCCGGCTCGTCCGGTTCTGTCCCAATCATTGTAAACAGGCGGAGGCTGG GGCGGGGTGGGAATGGGGTGCCAGAGGCCGGCCCAGGGCTTAGCGAAGGAGGTGGTTGCG GCGGCGGCGGCGGCGTGAGAGTCGGGAAGCGGCGGCTGCGGCAGGGCAGGCGCTCACCCG GCGCGGGCGCAGGTACCCTAGGAAACCCTGGTTCAAAAAGGTGTGATGGACAGGTGACGG AGAAGCCCTCTACACTGTCATCAGGAAGGCAGCATGACCGAGTGCTTCCTGCCCCCGCCC AGCAGCCCTGGTGAACACCGCCGGGTGGAGCATGGCAGTGGTCTCACACGCACCCCTAGC TCTGAGGAGATCAGCCCCACCAAGTTTCCTGGGTTGTACCGCACTGGCGAGCCCTCACCT CCCCATGACAACCTCCATGAGCCTCCTGATATAGTGTCTGATGATGAGAAAGACCATGGG AAGAAAAAAGGAAAATTTAAGAAAAAGGAAAAAAGAACTGAAGGCTATGCTGCCTTTCAG GAAGATAGCTCTGGAGATGAAGCTGAAAGTCCTTCCAAAATGAAGCGGTCTAAGGGGATC CATGTTTTCAAGAAGCCCAGCTTTTCTAAAAAGAAAGAGAAGGATTTTAAAATAAAGGAG AAACCCAAAGAGGAAAAACATAAAGAAGAAAAGCACAAAGAGGAAAAACATAAAGAGAAG AAGTCAAAAGACTTGACAGCAGCTGACGTCGTCAAACAGTGGAAGGAAAAGAAGAAAAAG AAGAAGCCGATTCAGGAGCCAGAGGTGGCTCCGGTAGACGTTCCGAGTCTCAAGCCCATT TTTGGAATTCCTTTGGCCGAGGCAGCTGAGAGGACCATGATGTACGACGGCGTCCGGCTG CCAGCTGTCTTCCGGGAGTGTGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGCCTTCAGCGAGCTGGGGACCGGAGAATGAGATGGCTGCGGCGGGGAAGGAGTGCGC GTGCGCGCTGGCCCGGCTCGTCCGGTTCTGTCCCAATCATTGTAAACAGGCGGAGGCTGG GGCGGGGTGGGAATGGGGTGCCAGAGGCCGGCCCAGGGCTTAGCGAAGGAGGTGGTTGCG GCGGCGGCGGCGGCGTGAGAGTCGGGAAGCGGCGGCTGCGGCAGGGCAGGCGCTCACCCG GCGCGGGCGCAGGTACCCTAGGAAACCCTGGTTCAAAAAGGTGTGATGGACAGGTGACGG AGAAGCCCTCTACACTGTCATCAGGAAGGCAGCATGACCGAGTGCTTCCTGCCCCCGCCC AGCAGCCCTGGTGAACACCGCCGGGTGGAGCATGGCAGTGGTCTCACACGCACCCCTAGC TCTGAGGAGATCAGCCCCACCAAGTTTCCTGGGTTGTACCGCACTGGCGAGCCCTCACCT CCCCATGACAACCTCCATGAGCCTCCTGATATAGTGTCTGATGATGAGAAAGACCATGGG AAGAAAAAAGGAAAATTTAAGAAAAAGGAAAAAAGAACTGAAGGCTATGCTGCCTTTCAG GAAGATAGCTCTGGAGATGAAGCTGAAAGTCCTTCCAAAATGAAGCGGTCTAAGGGGATC CATGTTTTCAAGAAGCCCAGCTTTTCTAAAAAGAAAGAGAAGGATTTTAAAATAAAGGAG AAACCCAAAGAGGAAAAACATAAAGAAGAAAAGCACAAAGAGGAAAAACATAAAGAGAAG AAGTCAAAAGACTTGACAGCAGCTGACGTCGTCAAACAGTGGAAGGAAAAGAAGAAAAAG AAGAAGCCGATTCAGGAGCCAGAGGTGGCTCCGGTAGACGTTCCGAGTCTCAAGCCCATT TTTGGAATTCCTTTGGCCGAGGCAGCTGAGAGGACCATGATGTACGACGGCGTCCGGCTG CCAGCTGTCTTCCGGGAGTGTGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 34-151, + strand, RNAz p=0.665862 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 34-151, + strand, RNAz p=0.665862 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_006788, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-254, gnl|bosTau2|chr24 (31802799-31802546) | |
| 1-254, gnl|Hg17|chr18 (9465433-9465691) | |
| 1-254, gnl|Mm7|chr17 (64102467-64102209) | |
| 279-575, gnl|bosTau2|chr24 (31781041-31780745) | |
| 279-575, gnl|canFam2|chr7 (78533931-78534199) | |
| 279-575, gnl|danRer3|chr16 (45866193-45865891) | |
| 279-575, gnl|dasNov1|scaffold_194295 (1059-826) | |
| 279-575, gnl|echTel1|scaffold_310727 (46513-46253) | |
| 279-575, gnl|fr1|chrUn (131812585-131812331) | |
| 279-575, gnl|galGal2|chrUn (116472042-116472302) | |
| 279-575, gnl|Hg17|chr18 (9502987-9503285) | |
| 279-575, gnl|hg17|chr2 (100499608-100499876) | |
| 279-575, gnl|mm7|chr17 (64085367-64085102) | |
| 279-575, gnl|Mm7|chr17 (64085365-64085067) | |
| 279-575, gnl|monDom2|scaffold_21 (23264329-23264072) | |
| 279-575, gnl|oryCun1|scaffold_189600 (3969-4236) | |
| 279-575, gnl|panTro1|chr12 (103390585-103390853) | |
| 279-575, gnl|rheMac2|chr13 (100362365-100362632) | |
| 279-575, gnl|rn3|chrUn (74024804-74025070) | |
| 279-575, gnl|tetNig1|chr15_random (1749195-1749448) | |
| 279-575, gnl|xenTro1|scaffold_333 (987170-986903) | |
| 578-984, gnl|bosTau2|chr24 (31779420-31779014) | |
| 578-984, gnl|Hg17|chr18 (9506843-9507249) | |
| 578-984, gnl|Mm7|chr17 (64082265-64081859) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-254, gnl|bosTau2|chr24 (31802799-31802546) | |
| 1-254, gnl|Hg17|chr18 (9465433-9465691) | |
| 1-254, gnl|Mm7|chr17 (64102467-64102209) | |
| 279-575, gnl|bosTau2|chr24 (31781041-31780745) | |
| 279-575, gnl|canFam2|chr7 (78533931-78534199) | |
| 279-575, gnl|danRer3|chr16 (45866193-45865891) | |
| 279-575, gnl|dasNov1|scaffold_194295 (1059-826) | |
| 279-575, gnl|echTel1|scaffold_310727 (46513-46253) | |
| 279-575, gnl|fr1|chrUn (131812585-131812331) | |
| 279-575, gnl|galGal2|chrUn (116472042-116472302) | |
| 279-575, gnl|Hg17|chr18 (9502987-9503285) | |
| 279-575, gnl|hg17|chr2 (100499608-100499876) | |
| 279-575, gnl|mm7|chr17 (64085367-64085102) | |
| 279-575, gnl|Mm7|chr17 (64085365-64085067) | |
| 279-575, gnl|monDom2|scaffold_21 (23264329-23264072) | |
| 279-575, gnl|oryCun1|scaffold_189600 (3969-4236) | |
| 279-575, gnl|panTro1|chr12 (103390585-103390853) | |
| 279-575, gnl|rheMac2|chr13 (100362365-100362632) | |
| 279-575, gnl|rn3|chrUn (74024804-74025070) | |
| 279-575, gnl|tetNig1|chr15_random (1749195-1749448) | |
| 279-575, gnl|xenTro1|scaffold_333 (987170-986903) | |
| 578-984, gnl|bosTau2|chr24 (31779420-31779014) | |
| 578-984, gnl|Hg17|chr18 (9506843-9507249) | |
| 578-984, gnl|Mm7|chr17 (64082265-64081859) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cki (0.330469) | |
| nep (0.183925) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.330469) | |
| nep (0.183925) | |
| jca (0.11396) | |
| jej (0.0989218) |