Ss1.1-Liv1-LVR010001H05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACACATGATCTTGCTAAAAACCATTGGGGATATCATCCCAGCTCCAAAGCTGGACCCGC AGCAGAAGATGGAGCTGGACATCAGCAGAGCCTCGGGGGAACAGGCAGAGTCCAGAGCTG CAGCGACTCCCCTTCCTCCACTGGGTCTAGAAAAGACCACTAGAGGCTGGCAGTCCCACC CTTCCCACCAAGCCCAGGGCCAGAGCTCCTTTCTGCTTCCATCTTTTCAGAGCAGATGCT CTTAAAGCATGTAGAAAGCAGTCCTGAACTTGGCTAGGGTGAGAGTCAAGCTGCTTCTCC ACCTGTGTCTGTGCCCGACTCCCCAAGTCCTCGAGCCTGGCCCAGCCCAGCAGCTCCCAG GCCCTCAGGCTTCTTGGTAGGTGGCTGCCACACTGTCCGCAGGGCTCTGCACCACGCACT GGCCGGGGACAGTCCCACTGATATTGTGGATGGCGCCGTAGGTCTGCTGCTGCTGTGGGG ACAGGGCTGTTTTCTCTGAGGATGAGCTGTTCAGGATCCGGGGCACGTAGGGTGTGAAAG GGGGAGGCAGGTGGGCCCCGACCTCACTTCCTCTGTCACTCGCCGCCGATTCTTCCATCT TGTAGTTCAGGGGGCTGAGGTGCTTGAAGCATCCAAAGCAGGTGTAGGCCAGGCAGACCA GGATGGTGAGCAGCACCACCAGGAAGGTGAACAGGGTGAGGGGAGCCTTCAGACCCAGGC GCAGGAAGGAGAAGAAGTAGAGCCAGAAGAGGCACAGGATGGGAGCGGCCAAGGCCTGGT TCACGGCCGCGAAGTGGATCCTCTTCTCCAGCTTGGCCGGGAGGTAGACGAAGTAGAGGT TGTGCCGGTCCACCATGTGCTTGAGCAGAATGTAGATGAGGCCAAACGGCGCGATGATGG GGCAGGTGATGCTATAGGCCATGATCACGGTGAAGACACACAGCATCCAGGCGTACATGG CTCCAAACTCGAACTCGAAGGCCTGGTTCTGCTTGATGTTCCTGCGGTCAGCCACGGTCT TGGCCATGCCCATGCGGAAGGTGTAGAGGATGAGGCCGGGCAGCCGCAGCAGCTCCATGC CGTTGCCGATGAAGGCCGAGGCAATGACGTAGTTGACGAAGAAGGCACCCTGGTCGGGCA GGAAGACGCACTCCAACCTGATAGAGGCCTCTGAGGAGGTTTTATCAAAGAGCCACCGGA AGAAAAAATCCAGACTGGTGAGGCCGAGGGAGGGCAGGATCAGCACCATGAAGATCAGGA ATATGTAGACCTTGGTCATCATGATCCGGTTCTCCCCTGACTTGGTCCAGTGAGACTCCA GCAGCGTGGAGTAGTAAACGACAGTGGGGAGCAGGGCCGAGAAGGACCACAGGAGGAGGG TCGGGAAGAACTGGCTGATGACGGGGTCGTTTAGCGCATGGATGGGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACACATGATCTTGCTAAAAACCATTGGGGATATCATCCCAGCTCCAAAGCTGGACCCGC AGCAGAAGATGGAGCTGGACATCAGCAGAGCCTCGGGGGAACAGGCAGAGTCCAGAGCTG CAGCGACTCCCCTTCCTCCACTGGGTCTAGAAAAGACCACTAGAGGCTGGCAGTCCCACC CTTCCCACCAAGCCCAGGGCCAGAGCTCCTTTCTGCTTCCATCTTTTCAGAGCAGATGCT CTTAAAGCATGTAGAAAGCAGTCCTGAACTTGGCTAGGGTGAGAGTCAAGCTGCTTCTCC ACCTGTGTCTGTGCCCGACTCCCCAAGTCCTCGAGCCTGGCCCAGCCCAGCAGCTCCCAG GCCCTCAGGCTTCTTGGTAGGTGGCTGCCACACTGTCCGCAGGGCTCTGCACCACGCACT GGCCGGGGACAGTCCCACTGATATTGTGGATGGCGCCGTAGGTCTGCTGCTGCTGTGGGG ACAGGGCTGTTTTCTCTGAGGATGAGCTGTTCAGGATCCGGGGCACGTAGGGTGTGAAAG GGGGAGGCAGGTGGGCCCCGACCTCACTTCCTCTGTCACTCGCCGCCGATTCTTCCATCT TGTAGTTCAGGGGGCTGAGGTGCTTGAAGCATCCAAAGCAGGTGTAGGCCAGGCAGACCA GGATGGTGAGCAGCACCACCAGGAAGGTGAACAGGGTGAGGGGAGCCTTCAGACCCAGGC GCAGGAAGGAGAAGAAGTAGAGCCAGAAGAGGCACAGGATGGGAGCGGCCAAGGCCTGGT TCACGGCCGCGAAGTGGATCCTCTTCTCCAGCTTGGCCGGGAGGTAGACGAAGTAGAGGT TGTGCCGGTCCACCATGTGCTTGAGCAGAATGTAGATGAGGCCAAACGGCGCGATGATGG GGCAGGTGATGCTATAGGCCATGATCACGGTGAAGACACACAGCATCCAGGCGTACATGG CTCCAAACTCGAACTCGAAGGCCTGGTTCTGCTTGATGTTCCTGCGGTCAGCCACGGTCT TGGCCATGCCCATGCGGAAGGTGTAGAGGATGAGGCCGGGCAGCCGCAGCAGCTCCATGC CGTTGCCGATGAAGGCCGAGGCAATGACGTAGTTGACGAAGAAGGCACCCTGGTCGGGCA GGAAGACGCACTCCAACCTGATAGAGGCCTCTGAGGAGGTTTTATCAAAGAGCCACCGGA AGAAAAAATCCAGACTGGTGAGGCCGAGGGAGGGCAGGATCAGCACCATGAAGATCAGGA ATATGTAGACCTTGGTCATCATGATCCGGTTCTCCCCTGACTTGGTCCAGTGAGACTCCA GCAGCGTGGAGTAGTAAACGACAGTGGGGAGCAGGGCCGAGAAGGACCACAGGAGGAGGG TCGGGAAGAACTGGCTGATGACGGGGTCGTTTAGCGCATGGATGGGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 713-831, + strand, RNAz p=0.949995 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 713-831, + strand, RNAz p=0.949995 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-532, gnl|bosTau2|chr16 (17226762-17227279) | |
| 1-532, gnl|Hg17|chr1 (222341125-222341649) | |
| 1-532, gnl|Mm7|chr1 (180954346-180953818) | |
| 713-883, gnl|bosTau2|chr16 (17229809-17229979) | |
| 713-883, gnl|Hg17|chr1 (222344346-222344516) | |
| 713-883, gnl|Mm7|chr1 (180951785-180951615) | |
| 995-1151, gnl|bosTau2|chr10 (61980175-61980019) | |
| 995-1151, gnl|Hg17|chr14 (76784599-76784443) | |
| 995-1151, gnl|Mm7|chr12 (85084528-85084372) | |
| 1297-1407, gnl|bosTau2|chr16 (17234222-17234332) | |
| 1297-1407, gnl|canFam2|chr7 (41929482-41929339) | |
| 1297-1407, gnl|danRer3|chr13 (45660785-45660920) | |
| 1297-1407, gnl|echTel1|scaffold_177009 (1653-1506) | |
| 1297-1407, gnl|fr1|chrUn (117848398-117848259) | |
| 1297-1407, gnl|galGal2|chr3 (13551915-13551793) | |
| 1297-1407, gnl|hg17|chr1 (222351342-222351492) | |
| 1297-1407, gnl|Hg17|chr1 (222351341-222351451) | |
| 1297-1407, gnl|loxAfr1|scaffold_9215 (7778-7919) | |
| 1297-1407, gnl|mm7|chr1 (180945301-180945160) | |
| 1297-1407, gnl|Mm7|chr1 (180945300-180945190) | |
| 1297-1407, gnl|monDom2|scaffold_13 (33433887-33434045) | |
| 1297-1407, gnl|oryCun1|scaffold_191200 (8033-8159) | |
| 1297-1407, gnl|panTro1|chr1 (206166424-206166574) | |
| 1297-1407, gnl|rheMac2|chr1 (144539779-144539627) | |
| 1297-1407, gnl|rn3|chr13 (96883186-96883045) | |
| 1297-1407, gnl|tetNig1|chrUn_random (47651383-47651244) | |
| 1297-1407, gnl|xenTro1|scaffold_215 (1591445-1591311) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-532, gnl|bosTau2|chr16 (17226762-17227279) | |
| 1-532, gnl|Hg17|chr1 (222341125-222341649) | |
| 1-532, gnl|Mm7|chr1 (180954346-180953818) | |
| 713-883, gnl|bosTau2|chr16 (17229809-17229979) | |
| 713-883, gnl|Hg17|chr1 (222344346-222344516) | |
| 713-883, gnl|Mm7|chr1 (180951785-180951615) | |
| 995-1151, gnl|bosTau2|chr10 (61980175-61980019) | |
| 995-1151, gnl|Hg17|chr14 (76784599-76784443) | |
| 995-1151, gnl|Mm7|chr12 (85084528-85084372) | |
| 1297-1407, gnl|bosTau2|chr16 (17234222-17234332) | |
| 1297-1407, gnl|canFam2|chr7 (41929482-41929339) | |
| 1297-1407, gnl|danRer3|chr13 (45660785-45660920) | |
| 1297-1407, gnl|echTel1|scaffold_177009 (1653-1506) | |
| 1297-1407, gnl|fr1|chrUn (117848398-117848259) | |
| 1297-1407, gnl|galGal2|chr3 (13551915-13551793) | |
| 1297-1407, gnl|hg17|chr1 (222351342-222351492) | |
| 1297-1407, gnl|Hg17|chr1 (222351341-222351451) | |
| 1297-1407, gnl|loxAfr1|scaffold_9215 (7778-7919) | |
| 1297-1407, gnl|mm7|chr1 (180945301-180945160) | |
| 1297-1407, gnl|Mm7|chr1 (180945300-180945190) | |
| 1297-1407, gnl|monDom2|scaffold_13 (33433887-33434045) | |
| 1297-1407, gnl|oryCun1|scaffold_191200 (8033-8159) | |
| 1297-1407, gnl|panTro1|chr1 (206166424-206166574) | |
| 1297-1407, gnl|rheMac2|chr1 (144539779-144539627) | |
| 1297-1407, gnl|rn3|chr13 (96883186-96883045) | |
| 1297-1407, gnl|tetNig1|chrUn_random (47651383-47651244) | |
| 1297-1407, gnl|xenTro1|scaffold_215 (1591445-1591311) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| eje (0.0988338) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| eje (0.0988338) |