Non-Coding RNA Search

Ss1.1-Liv1-LVR010002A03.5

Sequence:


               
               AGCGGGCCTCGTTTGGGGATCCCACCTGGGACGGAGCCTCCTGCGGCCGGCCCGTGTCCG
GCCCGCGCTGCCGCGGCCTGGGAGCTGAGCCGGGCGGACGGGACCGGACGGGGCGGGAGC
GGCCGGGCCCCGGGTGTCTGCGGCCTCCGGACGCGCCGGGGCCGGGCAGCGGGGCGGCGC
TGACGGGAGCGGAGCTGCCCCGAGGAGGAAGCGGGGTCGGGGTCGGCTCTAGAGGGGGAG
AAGGATCTGACCTTGCCGACCTCGCAGGCTGACAGGGGAGCCGCGCTCCCAAAGCAGCAT
GGATGCCCCCCGAAGGGACATGGAGTTGCTCAGCAACAGCCTGGCGGCCTACGCGCACAT
CCGCGCCAACCCTGAGAGCTTTGGCCTCTACTTCGTGCTGGGCGTCTGCTTTGGCCTGCT
GCTCACCCTGTGCCTACTAGTCATCAGCATCTCCTGCGCCCCGCGCCCGCGGCCCCGAGG
CCCCGCTCCTCGCCGCGACCCTCGCAGCAGCACCCTAGAGGCTGAGGACGATGACGACGA
CGACGACGACGAGGACACGGTGACGCGGCTGGGCCCTGACGACACGCTGCCTGGCCCGGA
GCTCTCCGCGGAGCCCGACGGGCCCCTGAGCGTCAACGTCTTCACATCCGCGGAGGAGCT
GGAGCGGGCACAGCGGCTGGAGGAGCGGGAACGGATCCTGCGGGAAATCTGGCGCACCGG
ACAGCCCGATCTGCTGGGCACCGGCACGCTGGGGCCCAGCCCCACGGGCACCGGCACCCT
GAGCCGAATGCACTATTACTGACTGGCCCCGCTCCCGCTGCAAGGCGCTCTGCATACTGG
ACATGCATAGGAGCTCCGAACTGCCCCAGGACCTTTGAACTGCTCCTGCCTACGGTGCTA
TGGAGGCCCCGCCCCCACGGCTCCCCCCGGTGCTATTGGGCTCGGATTCTCATCCCCTCG
GAGACACCCTTCCCCAGTCCAGCCAGAAGGCCCGGGGCAGGGGGGGGAAGTGTAGGACGC
AGGGCCCCCACCCCCCTCTCTGGGGTTAACAGGTGAAGTGACCAATGAAAGCTGCATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGGGCCTCGTTTGGGGATCCCACCTGGGACGGAGCCTCCTGCGGCCGGCCCGTGTCCG
GCCCGCGCTGCCGCGGCCTGGGAGCTGAGCCGGGCGGACGGGACCGGACGGGGCGGGAGC
GGCCGGGCCCCGGGTGTCTGCGGCCTCCGGACGCGCCGGGGCCGGGCAGCGGGGCGGCGC
TGACGGGAGCGGAGCTGCCCCGAGGAGGAAGCGGGGTCGGGGTCGGCTCTAGAGGGGGAG
AAGGATCTGACCTTGCCGACCTCGCAGGCTGACAGGGGAGCCGCGCTCCCAAAGCAGCAT
GGATGCCCCCCGAAGGGACATGGAGTTGCTCAGCAACAGCCTGGCGGCCTACGCGCACAT
CCGCGCCAACCCTGAGAGCTTTGGCCTCTACTTCGTGCTGGGCGTCTGCTTTGGCCTGCT
GCTCACCCTGTGCCTACTAGTCATCAGCATCTCCTGCGCCCCGCGCCCGCGGCCCCGAGG
CCCCGCTCCTCGCCGCGACCCTCGCAGCAGCACCCTAGAGGCTGAGGACGATGACGACGA
CGACGACGACGAGGACACGGTGACGCGGCTGGGCCCTGACGACACGCTGCCTGGCCCGGA
GCTCTCCGCGGAGCCCGACGGGCCCCTGAGCGTCAACGTCTTCACATCCGCGGAGGAGCT
GGAGCGGGCACAGCGGCTGGAGGAGCGGGAACGGATCCTGCGGGAAATCTGGCGCACCGG
ACAGCCCGATCTGCTGGGCACCGGCACGCTGGGGCCCAGCCCCACGGGCACCGGCACCCT
GAGCCGAATGCACTATTACTGACTGGCCCCGCTCCCGCTGCAAGGCGCTCTGCATACTGG
ACATGCATAGGAGCTCCGAACTGCCCCAGGACCTTTGAACTGCTCCTGCCTACGGTGCTA
TGGAGGCCCCGCCCCCACGGCTCCCCCCGGTGCTATTGGGCTCGGATTCTCATCCCCTCG
GAGACACCCTTCCCCAGTCCAGCCAGAAGGCCCGGGGCAGGGGGGGGAAGTGTAGGACGC
AGGGCCCCCACCCCCCTCTCTGGGGTTAACAGGTGAAGTGACCAATGAAAGCTGCATTCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9NVM1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NVM1_HUMAN

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               44-179, gnl|bosTau2|chr3 (76603072-76603208)
               

               
               44-179, gnl|Hg17|chr1 (36458290-36458164)
               


               
               365-1080, gnl|bosTau2|chr3 (76603856-76604569)
               

               
               365-1080, gnl|Hg17|chr1 (36457420-36456730)
               

               
               365-1080, gnl|Mm7|chr4 (125593882-125594516)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-179, gnl|bosTau2|chr3 (76603072-76603208)
               

               
               44-179, gnl|Hg17|chr1 (36458290-36458164)
               


               
               365-1080, gnl|bosTau2|chr3 (76603856-76604569)
               

               
               365-1080, gnl|Hg17|chr1 (36457420-36456730)
               

               
               365-1080, gnl|Mm7|chr4 (125593882-125594516)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               eep (0.61282)
               

               
               elu (0.385356)
               

               
               cag (0.302389)
               

               
               fli (0.202881)
               

               
               nje (0.16592)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.61282)
               

               
               elu (0.385356)
               

               
               cag (0.302389)
               

               
               fli (0.202881)
               

               
               nje (0.16592)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	44-179, gnl\|bosTau2\|chr3 (76603072-76603208)
	44-179, gnl\|Hg17\|chr1 (36458290-36458164)

	365-1080, gnl\|bosTau2\|chr3 (76603856-76604569)
	365-1080, gnl\|Hg17\|chr1 (36457420-36456730)
	365-1080, gnl\|Mm7\|chr4 (125593882-125594516)

	eep (0.61282)
	elu (0.385356)
	cag (0.302389)
	fli (0.202881)
	nje (0.16592)
	ute (0.132784)
	ebs (0.118301)
	jca (0.11396)
	jej (0.0989218)
	eje (0.0988338)