Ss1.1-Liv1-LVR010002C12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATGACGTATCTCTGAGCGTCCGACTCAGAGTTGACTGGAGAAAGCATGTGGGGCTGCG GCGCGTTCTGGGGGGCGCGAGCCCCGTCCCAGCTGCAGCGGTGGCTGCTCCCCGCTTCCC GCCGCCGCCGCCGGCCTGCTGCCGCCTCCTTCTCTGCATCTGCCGAGCCCTCCCGGGTTC AGGCGCTGGTCTATGGGCACCACGGGGACCCAGCCAAGGTCGTCGAACTGAAGAACCTGG AGCTGGCTGCTGTGGGCGGATCGGATGTCCATGTGAAGATGCTGGCGGCCCCTATCAATC CATCTGACATCAATATGATCCAAGGAAATTACGGCCTCCTTCCCCAGCTGCCGGCTGTTG GAGGGAACGAAGGTGTTGGACAGGTGGTGGCAGTGGGCAGCCATGTGACCGGGGTGAAGC CGGGAGACTGGGTGATTCCAGCAAATGCCGGTTTGGGAACCTGGCAGACGGAGGCGGTGT TCAGCGAGGATGCACTCATCGGGGTACCAAGGGATATCCCTCTTCAGAGCGCGGCCACCC TCGGTGTCAATCCCTGCACAGCCTACAGGATGCTGATGGACTTTGAGCAGCTGCGACCAG GGGATTCTGTTATCCAGAATGCATCCAACAGTGGAGTGGGGCAAGCAGTCATCCAGATCG CCGCAGCCCTGGGTCTGAGGACCATCAACGTGGTCCGAGACAGACCTGACATCCAGAAGC TGATGGACAGACTGAAGAATCTGGGGGCCGATCATGTTGTCACAGAAGAAGAACTAAGAA AGCCTGAGATGAAGAACTTCTTTAAGAATGTGCCCCAGCCGCGGCTTGCTCTCAACTGTG TTGGCGGGAAAAGCTCCACAGAGCTGCTGCGGCACTTGGCGCCTGGAGGAACCATGGTGA CCTACGGGGGGATGGCCAAGCAGCCCGTCGTCGCCTCCGTGAGCCTGCTCATTTTTAAAG ATCTCAAACTTCGGGGCTTTTGGATGTCCCAGTGGAAGAAGGACCACAATCCAGACCAGT TCAAGGAGCTGATCTTCACACTGTGCGACCTCATCCGCCGAGGCCAGCTCTCGGCCCCCG CCTGCTCCGAGGTCCCCCTGCAGGACTACCAGCGTGCCCTGGAGGCCTCCATGCAGCCCT TCGTGTCTTCAAAGCAGATTCTCACCATGTGGTGAGCCCAGAGGAGCCAGAGTTAAGTGG GAGGGGAGGCGGATCAGCAGGACCGGTTTCAGGCCCTCCCTTTGGGGCCCCCACCCTTTT GCAGGCTGCTCCTCTCCCTCCTGTCACTTCTGACTCAGAGAATCAGGAGGGCAGCCAGGG CTTTCCCAGGGCCAGCCTCAGGGTGTCTAATAAAGTCCAAATTTCCTAAAAACAAGCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATGACGTATCTCTGAGCGTCCGACTCAGAGTTGACTGGAGAAAGCATGTGGGGCTGCG GCGCGTTCTGGGGGGCGCGAGCCCCGTCCCAGCTGCAGCGGTGGCTGCTCCCCGCTTCCC GCCGCCGCCGCCGGCCTGCTGCCGCCTCCTTCTCTGCATCTGCCGAGCCCTCCCGGGTTC AGGCGCTGGTCTATGGGCACCACGGGGACCCAGCCAAGGTCGTCGAACTGAAGAACCTGG AGCTGGCTGCTGTGGGCGGATCGGATGTCCATGTGAAGATGCTGGCGGCCCCTATCAATC CATCTGACATCAATATGATCCAAGGAAATTACGGCCTCCTTCCCCAGCTGCCGGCTGTTG GAGGGAACGAAGGTGTTGGACAGGTGGTGGCAGTGGGCAGCCATGTGACCGGGGTGAAGC CGGGAGACTGGGTGATTCCAGCAAATGCCGGTTTGGGAACCTGGCAGACGGAGGCGGTGT TCAGCGAGGATGCACTCATCGGGGTACCAAGGGATATCCCTCTTCAGAGCGCGGCCACCC TCGGTGTCAATCCCTGCACAGCCTACAGGATGCTGATGGACTTTGAGCAGCTGCGACCAG GGGATTCTGTTATCCAGAATGCATCCAACAGTGGAGTGGGGCAAGCAGTCATCCAGATCG CCGCAGCCCTGGGTCTGAGGACCATCAACGTGGTCCGAGACAGACCTGACATCCAGAAGC TGATGGACAGACTGAAGAATCTGGGGGCCGATCATGTTGTCACAGAAGAAGAACTAAGAA AGCCTGAGATGAAGAACTTCTTTAAGAATGTGCCCCAGCCGCGGCTTGCTCTCAACTGTG TTGGCGGGAAAAGCTCCACAGAGCTGCTGCGGCACTTGGCGCCTGGAGGAACCATGGTGA CCTACGGGGGGATGGCCAAGCAGCCCGTCGTCGCCTCCGTGAGCCTGCTCATTTTTAAAG ATCTCAAACTTCGGGGCTTTTGGATGTCCCAGTGGAAGAAGGACCACAATCCAGACCAGT TCAAGGAGCTGATCTTCACACTGTGCGACCTCATCCGCCGAGGCCAGCTCTCGGCCCCCG CCTGCTCCGAGGTCCCCCTGCAGGACTACCAGCGTGCCCTGGAGGCCTCCATGCAGCCCT TCGTGTCTTCAAAGCAGATTCTCACCATGTGGTGAGCCCAGAGGAGCCAGAGTTAAGTGG GAGGGGAGGCGGATCAGCAGGACCGGTTTCAGGCCCTCCCTTTGGGGCCCCCACCCTTTT GCAGGCTGCTCCTCTCCCTCCTGTCACTTCTGACTCAGAGAATCAGGAGGGCAGCCAGGG CTTTCCCAGGGCCAGCCTCAGGGTGTCTAATAAAGTCCAAATTTCCTAAAAACAAGCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 340-457, - strand, RNAz p=0.888044 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 340-457, - strand, RNAz p=0.888044 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-226, gnl|bosTau2|chr2 (77135394-77135616) | |
| 1-226, gnl|canFam2|chr2 (74260761-74260317) | |
| 1-226, gnl|dasNov1|scaffold_8587 (1430-986) | |
| 1-226, gnl|echTel1|scaffold_179463 (5137-5571) | |
| 1-226, gnl|hg17|chr1 (29377812-29378244) | |
| 1-226, gnl|Hg17|chr1 (29378080-29377859) | |
| 1-226, gnl|loxAfr1|scaffold_922 (3999-3548) | |
| 1-226, gnl|mm7|chr4 (131058145-131057705) | |
| 1-226, gnl|Mm7|chr4 (131057875-131058097) | |
| 1-226, gnl|monDom2|scaffold_147 (1917996-1918473) | |
| 1-226, gnl|oryCun1|scaffold_204441 (6082-5618) | |
| 1-226, gnl|panTro1|chr1 (29971775-29972208) | |
| 1-226, gnl|rheMac2|chr1 (31972429-31972850) | |
| 1-226, gnl|rn3|chr5 (150710411-150709963) | |
| 323-457, gnl|bosTau2|chr2 (77152042-77152176) | |
| 323-457, gnl|canFam2|chr2 (74274446-74274286) | |
| 323-457, gnl|danRer3|chr16 (578004-578142) | |
| 323-457, gnl|echTel1|scaffold_310765 (209177-209017) | |
| 323-457, gnl|fr1|chrUn (282244436-282244297) | |
| 323-457, gnl|hg17|chr1 (29363108-29363268) | |
| 323-457, gnl|Hg17|chr1 (29363266-29363132) | |
| 323-457, gnl|loxAfr1|scaffold_922 (18715-18555) | |
| 323-457, gnl|mm7|chr4 (131069162-131069002) | |
| 323-457, gnl|Mm7|chr4 (131069002-131069136) | |
| 323-457, gnl|monDom2|scaffold_147 (1899855-1900008) | |
| 323-457, gnl|oryCun1|scaffold_200047 (51987-51827) | |
| 323-457, gnl|panTro1|chr1 (29957074-29957234) | |
| 323-457, gnl|rheMac2|chr1 (31957224-31957384) | |
| 323-457, gnl|rn3|chr5 (150722313-150722152) | |
| 323-457, gnl|tetNig1|chrUn_random (115267008-115266870) | |
| 598-703, gnl|bosTau2|chr2 (77163236-77163341) | |
| 598-703, gnl|canFam2|chr2 (74284579-74284472) | |
| 598-703, gnl|danRer3|chr16 (574773-574879) | |
| 598-703, gnl|echTel1|scaffold_282856 (39916-39809) | |
| 598-703, gnl|fr1|chrUn (282245027-282244920) | |
| 598-703, gnl|hg17|chr1 (29350257-29350364) | |
| 598-703, gnl|Hg17|chr1 (29350364-29350259) | |
| 598-703, gnl|loxAfr1|scaffold_922 (30137-30030) | |
| 598-703, gnl|mm7|chr4 (131075286-131075179) | |
| 598-703, gnl|Mm7|chr4 (131075177-131075282) | |
| 598-703, gnl|monDom2|scaffold_147 (1893367-1893474) | |
| 598-703, gnl|oryCun1|scaffold_191609 (48352-48245) | |
| 598-703, gnl|panTro1|chr1 (29933326-29933433) | |
| 598-703, gnl|rheMac2|chr1 (31944647-31944754) | |
| 598-703, gnl|rn3|chr5 (150727952-150727845) | |
| 1012-1316, gnl|bosTau2|chr2 (77171027-77171335) | |
| 1012-1316, gnl|Hg17|chr1 (29341310-29340985) | |
| 1012-1316, gnl|Mm7|chr4 (131081863-131082156) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-226, gnl|bosTau2|chr2 (77135394-77135616) | |
| 1-226, gnl|canFam2|chr2 (74260761-74260317) | |
| 1-226, gnl|dasNov1|scaffold_8587 (1430-986) | |
| 1-226, gnl|echTel1|scaffold_179463 (5137-5571) | |
| 1-226, gnl|hg17|chr1 (29377812-29378244) | |
| 1-226, gnl|Hg17|chr1 (29378080-29377859) | |
| 1-226, gnl|loxAfr1|scaffold_922 (3999-3548) | |
| 1-226, gnl|mm7|chr4 (131058145-131057705) | |
| 1-226, gnl|Mm7|chr4 (131057875-131058097) | |
| 1-226, gnl|monDom2|scaffold_147 (1917996-1918473) | |
| 1-226, gnl|oryCun1|scaffold_204441 (6082-5618) | |
| 1-226, gnl|panTro1|chr1 (29971775-29972208) | |
| 1-226, gnl|rheMac2|chr1 (31972429-31972850) | |
| 1-226, gnl|rn3|chr5 (150710411-150709963) | |
| 323-457, gnl|bosTau2|chr2 (77152042-77152176) | |
| 323-457, gnl|canFam2|chr2 (74274446-74274286) | |
| 323-457, gnl|danRer3|chr16 (578004-578142) | |
| 323-457, gnl|echTel1|scaffold_310765 (209177-209017) | |
| 323-457, gnl|fr1|chrUn (282244436-282244297) | |
| 323-457, gnl|hg17|chr1 (29363108-29363268) | |
| 323-457, gnl|Hg17|chr1 (29363266-29363132) | |
| 323-457, gnl|loxAfr1|scaffold_922 (18715-18555) | |
| 323-457, gnl|mm7|chr4 (131069162-131069002) | |
| 323-457, gnl|Mm7|chr4 (131069002-131069136) | |
| 323-457, gnl|monDom2|scaffold_147 (1899855-1900008) | |
| 323-457, gnl|oryCun1|scaffold_200047 (51987-51827) | |
| 323-457, gnl|panTro1|chr1 (29957074-29957234) | |
| 323-457, gnl|rheMac2|chr1 (31957224-31957384) | |
| 323-457, gnl|rn3|chr5 (150722313-150722152) | |
| 323-457, gnl|tetNig1|chrUn_random (115267008-115266870) | |
| 598-703, gnl|bosTau2|chr2 (77163236-77163341) | |
| 598-703, gnl|canFam2|chr2 (74284579-74284472) | |
| 598-703, gnl|danRer3|chr16 (574773-574879) | |
| 598-703, gnl|echTel1|scaffold_282856 (39916-39809) | |
| 598-703, gnl|fr1|chrUn (282245027-282244920) | |
| 598-703, gnl|hg17|chr1 (29350257-29350364) | |
| 598-703, gnl|Hg17|chr1 (29350364-29350259) | |
| 598-703, gnl|loxAfr1|scaffold_922 (30137-30030) | |
| 598-703, gnl|mm7|chr4 (131075286-131075179) | |
| 598-703, gnl|Mm7|chr4 (131075177-131075282) | |
| 598-703, gnl|monDom2|scaffold_147 (1893367-1893474) | |
| 598-703, gnl|oryCun1|scaffold_191609 (48352-48245) | |
| 598-703, gnl|panTro1|chr1 (29933326-29933433) | |
| 598-703, gnl|rheMac2|chr1 (31944647-31944754) | |
| 598-703, gnl|rn3|chr5 (150727952-150727845) | |
| 1012-1316, gnl|bosTau2|chr2 (77171027-77171335) | |
| 1012-1316, gnl|Hg17|chr1 (29341310-29340985) | |
| 1012-1316, gnl|Mm7|chr4 (131081863-131082156) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ill (0.175593) | |
| cki (0.165235) | |
| pty (0.142714) | |
| ese (0.126502) | |
| eru (0.120048) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| cki (0.165235) | |
| pty (0.142714) | |
| ese (0.126502) | |
| eru (0.120048) | |
| cty (0.10408) | |
| eje (0.0988338) |