Ss1.1-Liv1-LVR010002D01.5
|
CTCCCCATGCCGCCCTGCCCGCGACCCGTCCCGCTCCCCACGCCGGGTTTCCTGGTTAAG
ATGGCGGCCCCCGTGGCAGCTCAGGCCCGGAAACTTCTGAGAGACCTGGCGTTCCGGCCC
CCGCTCTTGGCGGCTAGGTCCCAGGTGGTTCAATTAACCCCCAGAAGATGGCTGAACCTG
CAGGAATACCAGAGCAAGAAACTGATGTCTGACAATGGAGTGAAAGTTCAAAGATTTTTT
GTAGCAGACACTGCCAATGAAGCTCTCGAGGCTGCTAAGAGACTAAATGCAAAAGAAATT
GTTTTAAAAGCCCAGATCTTAGCTGGAGGAAGAGGAAAAGGTGTCTTCAGTAGCGGTTTG
AAAGGAGGTGTTCATTTAACAAAAGACCCTGAAGTTGTGGGTCAGTTGGCTAAACAGATG
ATTGGGTATAATCTAGCAACAAAACAAACTCCAAAAGAAGGTGTGAAAGTTAACAAGGTG
ATGGTAGCTGAAGCATTGGACATTTCCAGGGAAACCTACCTGGCCATTCTTATGGACCGG
TCTTGCAATGGTCCCGTATTGGTGGGCAGCCCTCAGGGAGGTGTCGACATTGAAGAAGTG
GCAGCTTCAAACCCAGAACTTATTTTTAAGGAGCAAATTGACATTATTGAAGGAATAAAG
GACAGCCAGGCTCAGCGGATGGCAGAAAATCTAGGCTTCCTCGGGCCTTTGCAAAACCAG
GCTGCAGATCAAATTAAGAAGCTTTATAATCTCTTCCTGAAAATCGATGCTACTCAGGTG
GAAGTGAATCCCTTTGGTGAAACTCCAGAAGGACAAGTTGTCTGTTTTGATGCCAAGATA
AACTTTGATGACAATGCAGAATTCCGACAGAAGGATATATTTGCTATGGACGACAAATCA
GAGAATGAGCCCATTGAAAATGAAGCTGCGAAGTATGATCTAAAATACATAGGACTGGAT
GGGAACATCGCCTGCTTTGTAAATGGGGCTGGACTTGCCATGGCTACCTGTGACATCATT
TTCTTGAATGGTGGGAAGCCAGCCAACTTCTTGGATCTTGGAGGTGGTGTAAAGGAATCT
CAGGTTTATCAAGCATTCAAACTGCTCACAGCCGATCCTAAGGTTGAAGCCATCCTAGTG
AATATTTTTGGTGGAATCGTCAACTGTGCCATCATTGCCAATGGGATCACCAAAGCATGC
CGGGAGCTGGAACTCAAGGTGCCTCTGGTGGTCCGGCTTGAAGGAACCAATGTCCACGAA
GCCCAGAACATTCTCACTAACAGCGGACTCCCCATTACTTCGGCTGTCGACCTGGAGGAT
GCAGCCAAGAAGGCTGTGGCCAGCGTGACTAAGAAGTGATGCCTTTGTCCTGATCCCTCG
GAGGAAGAAGTTTTCCCATAAGAAGGGATTGTTCTCTCATCACTGTGAAAGAAATGGTTA
TCCCAATGAGGGGGAAAAAAAAAAAAAAAAAAAGAAGGGAAGAGCAAGGAAGCACTGTAT
TAAAAAATCTTAAATCGGTTTTTTCTTGAATAAGATATCTAGACAGCCTAAATAATCTGA
TTTCCCTTATAGTATAATGCCCTGGGTTCTCATACTTTTCTGTCCTGGTGAGCCAGCTCA
GTAGGCATTGTTTTGCCAACTTTGGAGAACTGTCCATATGGCCAGACATTGTGTGTATAT
ACAGCATTTGAGATCAGGCTCTGGTTCATTTACGGTAAATTTGGTGAACATTTCATCCTG
TGTTAATTAAAAAAAAAAAAGTCACAGGCTATTAAAAAAACTCAGACAAGATTACATTTA
GCAGATTAACCGTGAAAAAGGTACAACTAAGACATTCAAACAAACATCTGTTATAAACTG
CAACAGTTTTTACAATTTCTAATTCTAACATGTTTGGAAAATCTGTGAATATTACAAAAT
GTATTTTACAATGGAAAATCTGCATTAATATCCTATTATATGTATCCTCCCATTTGCCTT
AATATTAAATATACTGTTTAACTCACACTAAAAATAAAGCCAGAAGCCTTTTTTGTGATT
TTGGAGTAGAAGGTTCTCTTTTTACATCAAAACTGAAGACTGTGAATTCTTATGGAAATC
ACTGATTCAGTCATTTCAAGATGAGACAGCATCGAAGATCAGATTATGCTGTGTCACTGT
CTTCCCTCCCCTCCTCGTACCCACTATAATCTACCACCTGAGAAAATGTTATTGAGAGAA
TGTGCCTTTTTTTGCATAATGTCCATTCTTGTGGTGAGAAAGAATGTGAATTAGATTTTT
GTCTAAATTTTGATAAATTTTGATCTGTACACAAATTCAAATAAAGTCCTCTGTTTTGTA
AACTCTAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTCCCCATGCCGCCCTGCCCGCGACCCGTCCCGCTCCCCACGCCGGGTTTCCTGGTTAAG
ATGGCGGCCCCCGTGGCAGCTCAGGCCCGGAAACTTCTGAGAGACCTGGCGTTCCGGCCC
CCGCTCTTGGCGGCTAGGTCCCAGGTGGTTCAATTAACCCCCAGAAGATGGCTGAACCTG
CAGGAATACCAGAGCAAGAAACTGATGTCTGACAATGGAGTGAAAGTTCAAAGATTTTTT
GTAGCAGACACTGCCAATGAAGCTCTCGAGGCTGCTAAGAGACTAAATGCAAAAGAAATT
GTTTTAAAAGCCCAGATCTTAGCTGGAGGAAGAGGAAAAGGTGTCTTCAGTAGCGGTTTG
AAAGGAGGTGTTCATTTAACAAAAGACCCTGAAGTTGTGGGTCAGTTGGCTAAACAGATG
ATTGGGTATAATCTAGCAACAAAACAAACTCCAAAAGAAGGTGTGAAAGTTAACAAGGTG
ATGGTAGCTGAAGCATTGGACATTTCCAGGGAAACCTACCTGGCCATTCTTATGGACCGG
TCTTGCAATGGTCCCGTATTGGTGGGCAGCCCTCAGGGAGGTGTCGACATTGAAGAAGTG
GCAGCTTCAAACCCAGAACTTATTTTTAAGGAGCAAATTGACATTATTGAAGGAATAAAG
GACAGCCAGGCTCAGCGGATGGCAGAAAATCTAGGCTTCCTCGGGCCTTTGCAAAACCAG
GCTGCAGATCAAATTAAGAAGCTTTATAATCTCTTCCTGAAAATCGATGCTACTCAGGTG
GAAGTGAATCCCTTTGGTGAAACTCCAGAAGGACAAGTTGTCTGTTTTGATGCCAAGATA
AACTTTGATGACAATGCAGAATTCCGACAGAAGGATATATTTGCTATGGACGACAAATCA
GAGAATGAGCCCATTGAAAATGAAGCTGCGAAGTATGATCTAAAATACATAGGACTGGAT
GGGAACATCGCCTGCTTTGTAAATGGGGCTGGACTTGCCATGGCTACCTGTGACATCATT
TTCTTGAATGGTGGGAAGCCAGCCAACTTCTTGGATCTTGGAGGTGGTGTAAAGGAATCT
CAGGTTTATCAAGCATTCAAACTGCTCACAGCCGATCCTAAGGTTGAAGCCATCCTAGTG
AATATTTTTGGTGGAATCGTCAACTGTGCCATCATTGCCAATGGGATCACCAAAGCATGC
CGGGAGCTGGAACTCAAGGTGCCTCTGGTGGTCCGGCTTGAAGGAACCAATGTCCACGAA
GCCCAGAACATTCTCACTAACAGCGGACTCCCCATTACTTCGGCTGTCGACCTGGAGGAT
GCAGCCAAGAAGGCTGTGGCCAGCGTGACTAAGAAGTGATGCCTTTGTCCTGATCCCTCG
GAGGAAGAAGTTTTCCCATAAGAAGGGATTGTTCTCTCATCACTGTGAAAGAAATGGTTA
TCCCAATGAGGGGGAAAAAAAAAAAAAAAAAAAGAAGGGAAGAGCAAGGAAGCACTGTAT
TAAAAAATCTTAAATCGGTTTTTTCTTGAATAAGATATCTAGACAGCCTAAATAATCTGA
TTTCCCTTATAGTATAATGCCCTGGGTTCTCATACTTTTCTGTCCTGGTGAGCCAGCTCA
GTAGGCATTGTTTTGCCAACTTTGGAGAACTGTCCATATGGCCAGACATTGTGTGTATAT
ACAGCATTTGAGATCAGGCTCTGGTTCATTTACGGTAAATTTGGTGAACATTTCATCCTG
TGTTAATTAAAAAAAAAAAAGTCACAGGCTATTAAAAAAACTCAGACAAGATTACATTTA
GCAGATTAACCGTGAAAAAGGTACAACTAAGACATTCAAACAAACATCTGTTATAAACTG
CAACAGTTTTTACAATTTCTAATTCTAACATGTTTGGAAAATCTGTGAATATTACAAAAT
GTATTTTACAATGGAAAATCTGCATTAATATCCTATTATATGTATCCTCCCATTTGCCTT
AATATTAAATATACTGTTTAACTCACACTAAAAATAAAGCCAGAAGCCTTTTTTGTGATT
TTGGAGTAGAAGGTTCTCTTTTTACATCAAAACTGAAGACTGTGAATTCTTATGGAAATC
ACTGATTCAGTCATTTCAAGATGAGACAGCATCGAAGATCAGATTATGCTGTGTCACTGT
CTTCCCTCCCCTCCTCGTACCCACTATAATCTACCACCTGAGAAAATGTTATTGAGAGAA
TGTGCCTTTTTTTGCATAATGTCCATTCTTGTGGTGAGAAAGAATGTGAATTAGATTTTT
GTCTAAATTTTGATAAATTTTGATCTGTACACAAATTCAAATAAAGTCCTCTGTTTTGTA
AACTCTAAAAAA
|
|
gi|21264506|sp|P53590|SCB2_PIG |
Protein identifier
|
gi|21264506|sp|P53590|SCB2_PIG |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
143-286, gnl|bosTau2|chr26 (14749065-14748922) |
|
143-286, gnl|canFam2|chr20 (26962602-26962446) |
|
143-286, gnl|danRer3|chr11 (16672960-16673116) |
|
143-286, gnl|dasNov1|scaffold_7004 (54902-55058) |
|
143-286, gnl|fr1|chrUn (113744224-113744068) |
|
143-286, gnl|galGal2|chr12 (14820126-14820282) |
|
143-286, gnl|hg17|chr3 (67742565-67742721) |
|
143-286, gnl|Hg17|chr3 (67742712-67742569) |
|
143-286, gnl|loxAfr1|scaffold_79409 (10471-10315) |
|
143-286, gnl|mm7|chr6 (95743555-95743703) |
|
143-286, gnl|Mm7|chr6 (95743702-95743559) |
|
143-286, gnl|monDom2|scaffold_5 (14684395-14684547) |
|
143-286, gnl|panTro1|chr2 (69485572-69485728) |
|
143-286, gnl|rheMac2|chr2 (68581209-68581053) |
|
143-286, gnl|rn3|chr4 (130462850-130462998) |
|
143-286, gnl|tetNig1|chr11 (1413414-1413259) |
|
143-286, gnl|xenTro1|scaffold_385 (593985-594137) |
| |
|
1237-2348, gnl|bosTau2|chr26 (14518384-14517288) |
|
1237-2348, gnl|Hg17|chr3 (67508980-67507833) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
143-286, gnl|bosTau2|chr26 (14749065-14748922) |
|
143-286, gnl|canFam2|chr20 (26962602-26962446) |
|
143-286, gnl|danRer3|chr11 (16672960-16673116) |
|
143-286, gnl|dasNov1|scaffold_7004 (54902-55058) |
|
143-286, gnl|fr1|chrUn (113744224-113744068) |
|
143-286, gnl|galGal2|chr12 (14820126-14820282) |
|
143-286, gnl|hg17|chr3 (67742565-67742721) |
|
143-286, gnl|Hg17|chr3 (67742712-67742569) |
|
143-286, gnl|loxAfr1|scaffold_79409 (10471-10315) |
|
143-286, gnl|mm7|chr6 (95743555-95743703) |
|
143-286, gnl|Mm7|chr6 (95743702-95743559) |
|
143-286, gnl|monDom2|scaffold_5 (14684395-14684547) |
|
143-286, gnl|panTro1|chr2 (69485572-69485728) |
|
143-286, gnl|rheMac2|chr2 (68581209-68581053) |
|
143-286, gnl|rn3|chr4 (130462850-130462998) |
|
143-286, gnl|tetNig1|chr11 (1413414-1413259) |
|
143-286, gnl|xenTro1|scaffold_385 (593985-594137) |
| |
|
1237-2348, gnl|bosTau2|chr26 (14518384-14517288) |
|
1237-2348, gnl|Hg17|chr3 (67508980-67507833) |
|
sug (1.14562) |
|
tra (0.984737) |
|
kid (0.648677) |
|
tbr (0.616713) |
|
hea (0.613497) |
|
lun (0.601956) |
|
lin (0.582411) |
|
ova (0.516529) |
|
mas (0.42061) |
|
thg (0.380373) |
|
gul (0.355177) |
|
ill (0.351185) |
|
rec (0.346141) |
|
mcp (0.341297) |
|
vin (0.332557) |
|
csp (0.322373) |
|
cag (0.302389) |
|
isp (0.300752) |
|
bfe (0.299715) |
|
eje (0.296501) |
|
ski (0.29347) |
|
liv (0.292569) |
|
ldo (0.291008) |
|
fce (0.271592) |
|
ssp (0.271039) |
|
cov (0.264306) |
|
spc (0.226732) |
|
fli (0.202881) |
|
aor (0.195274) |
|
sag (0.182715) |
|
sin (0.174948) |
|
cje (0.165235) |
|
nco (0.161734) |
|
fat (0.147427) |
|
cst (0.140036) |
|
nca (0.136874) |
|
che (0.136314) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ret (0.128733) |
|
bla (0.124347) |
|
eru (0.120048) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
sug (1.14562) |
|
tra (0.984737) |
|
kid (0.648677) |
|
tbr (0.616713) |
|
hea (0.613497) |
|
lun (0.601956) |
|
lin (0.582411) |
|
ova (0.516529) |
|
mas (0.42061) |
|
thg (0.380373) |
|
gul (0.355177) |
|
ill (0.351185) |
|
rec (0.346141) |
|
mcp (0.341297) |
|
vin (0.332557) |
|
csp (0.322373) |
|
cag (0.302389) |
|
isp (0.300752) |
|
bfe (0.299715) |
|
eje (0.296501) |
|
ski (0.29347) |
|
liv (0.292569) |
|
ldo (0.291008) |
|
fce (0.271592) |
|
ssp (0.271039) |
|
cov (0.264306) |
|
spc (0.226732) |
|
fli (0.202881) |
|
aor (0.195274) |
|
sag (0.182715) |
|
sin (0.174948) |
|
cje (0.165235) |
|
nco (0.161734) |
|
fat (0.147427) |
|
cst (0.140036) |
|
nca (0.136874) |
|
che (0.136314) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ret (0.128733) |
|
bla (0.124347) |
|
eru (0.120048) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
