Ss1.1-Liv1-LVR010002G11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCGCAGCGGCCGGAGCGGCCCGCAGGCGACGCCGGGGCCACGCGCGTGACGAGCAGGT GGCGGCGGCTGCAGGCCTTCTCGTCGGAAACCTCCAAGGACCCTCGTTCGGGCGCGGGAG GCCGCGGGCGACCAGCGGACGGCCGTTCTCAGTGAAGGGCGCTGCACTCGCTACTGAGCT GTGGCCATGGGCCTGCTCGCCTTCCTGAAGACCCAGTTCGTCGTGCACCTGCTCATCGGC TTCGTCTTCGTGGTGAGCGGGCTCGTCATCAACGCCATCCAGCTGTGCACGCTGGTCCTC TGGCCCCTGAACAAGCAGCTGTACCGCCGGCTCAACTGCCGCCTCGCCTACTCGCTCTGG AGCCAGCTGGTCATGCTGCTGGAGTGGTGGTCGTGCACCGAGTGCACGCTCTTCACCGAC GAGGCCACGGTGGGCCGCTTCGGGAGGGAGCACGTGGTCATCATCCTCAACCACAACTTC GAGATCGACTTCCTCTGCGGCTGGACCATGTGCGAGCGCTTCGGCGTGCTGGGGAGTTCC AAAGTCCTGGCTAAACGGGAGCTGCTCTACGTGCCGCTCATCGGCTGGACGTGGTACTTC CTGGAGATCGTGTTCTGCAAACGGAAGTGGGAGGAGGACCGGGACACTGTGGTCGAAGGA CTGAAGCGCCTGGCCGACTACCCGGAGTACATGTGGTTCCTCCTGTACTGCGAGGGCACG CGCTTCACGGAGAAGAAGCACCGCGTCAGCATGGAGGTGGCCGCCTCCAAGGGGCTGCCC CCCCTCAAGTACCACCTGCTGCCTCGGACCAAGGGCTTCACCACCGCGGTCCAGTGCCTC CGCGGGACAGTCGCAGCTGTCTACGATGTCACGCTGAATTTCCGAGGAAACAAGAACCCG TCTCTGCTGGGGATCCTCTACGGGAAGAAGTACGAGGCCGACATGTGTGTGAGGAGGTTT CCTCTGGAAGAGATCCCGCTGGACGAGAAGGAAGCGGCCCAGTGGCTTCATAAACTGTAC CAGGAGAAGGATGCGCTGCAGGAGATGTATCACCAGAAGGGCGTGTTTCCAGGGCAGCAG TTCAAGCCCGCCCGACGGCCGGGGACGCTCCTCAACTTCCTCGCCTGGGCCACCGTGCTC CTGTCTCCTCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCGCAGCGGCCGGAGCGGCCCGCAGGCGACGCCGGGGCCACGCGCGTGACGAGCAGGT GGCGGCGGCTGCAGGCCTTCTCGTCGGAAACCTCCAAGGACCCTCGTTCGGGCGCGGGAG GCCGCGGGCGACCAGCGGACGGCCGTTCTCAGTGAAGGGCGCTGCACTCGCTACTGAGCT GTGGCCATGGGCCTGCTCGCCTTCCTGAAGACCCAGTTCGTCGTGCACCTGCTCATCGGC TTCGTCTTCGTGGTGAGCGGGCTCGTCATCAACGCCATCCAGCTGTGCACGCTGGTCCTC TGGCCCCTGAACAAGCAGCTGTACCGCCGGCTCAACTGCCGCCTCGCCTACTCGCTCTGG AGCCAGCTGGTCATGCTGCTGGAGTGGTGGTCGTGCACCGAGTGCACGCTCTTCACCGAC GAGGCCACGGTGGGCCGCTTCGGGAGGGAGCACGTGGTCATCATCCTCAACCACAACTTC GAGATCGACTTCCTCTGCGGCTGGACCATGTGCGAGCGCTTCGGCGTGCTGGGGAGTTCC AAAGTCCTGGCTAAACGGGAGCTGCTCTACGTGCCGCTCATCGGCTGGACGTGGTACTTC CTGGAGATCGTGTTCTGCAAACGGAAGTGGGAGGAGGACCGGGACACTGTGGTCGAAGGA CTGAAGCGCCTGGCCGACTACCCGGAGTACATGTGGTTCCTCCTGTACTGCGAGGGCACG CGCTTCACGGAGAAGAAGCACCGCGTCAGCATGGAGGTGGCCGCCTCCAAGGGGCTGCCC CCCCTCAAGTACCACCTGCTGCCTCGGACCAAGGGCTTCACCACCGCGGTCCAGTGCCTC CGCGGGACAGTCGCAGCTGTCTACGATGTCACGCTGAATTTCCGAGGAAACAAGAACCCG TCTCTGCTGGGGATCCTCTACGGGAAGAAGTACGAGGCCGACATGTGTGTGAGGAGGTTT CCTCTGGAAGAGATCCCGCTGGACGAGAAGGAAGCGGCCCAGTGGCTTCATAAACTGTAC CAGGAGAAGGATGCGCTGCAGGAGATGTATCACCAGAAGGGCGTGTTTCCAGGGCAGCAG TTCAAGCCCGCCCGACGGCCGGGGACGCTCCTCAACTTCCTCGCCTGGGCCACCGTGCTC CTGTCTCCTCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 92 entry(ies) | More info |
| Aligned organism(s): 92 entry(ies) | Help | Less info |
| 187-364, gnl|bosTau2|chr9 (59000081-58999904) | |
| 187-364, gnl|canFam2|chr1 (52844034-52844219) | |
| 187-364, gnl|canFam2|chr31 (40197527-40197715) | |
| 187-364, gnl|danRer3|chr1 (48188897-48188711) | |
| 187-364, gnl|danRer3|chr13 (38419485-38419302) | |
| 187-364, gnl|dasNov1|scaffold_99651 (43026-42833) | |
| 187-364, gnl|echTel1|scaffold_246379 (1361-1171) | |
| 187-364, gnl|echTel1|scaffold_296952 (119837-119652) | |
| 187-364, gnl|fr1|chrUn (50778072-50777876) | |
| 187-364, gnl|fr1|chrUn (160710296-160710111) | |
| 187-364, gnl|galGal2|chr1 (103927701-103927893) | |
| 187-364, gnl|galGal2|chr3 (41309414-41309229) | |
| 187-364, gnl|hg17|chr21 (44203988-44204185) | |
| 187-364, gnl|hg17|chr6 (161623475-161623660) | |
| 187-364, gnl|Hg17|chr6 (161623656-161623479) | |
| 187-364, gnl|loxAfr1|scaffold_27342 (15217-15024) | |
| 187-364, gnl|loxAfr1|scaffold_27342 (15030-15215) | |
| 187-364, gnl|mm7|chr10 (77942634-77942443) | |
| 187-364, gnl|mm7|chr17 (10869417-10869232) | |
| 187-364, gnl|Mm7|chr17 (10869234-10869411) | |
| 187-364, gnl|monDom2|scaffold_0 (42323581-42323396) | |
| 187-364, gnl|monDom2|scaffold_29 (10318596-10318789) | |
| 187-364, gnl|oryCun1|scaffold_86750 (1994-2183) | |
| 187-364, gnl|oryCun1|scaffold_86750 (2179-1994) | |
| 187-364, gnl|panTro1|chr5 (165709016-165709201) | |
| 187-364, gnl|rheMac2|chr4 (158043979-158043793) | |
| 187-364, gnl|rheMac2|chr4 (158043793-158043978) | |
| 187-364, gnl|rn3|chr1 (43065690-43065875) | |
| 187-364, gnl|rn3|chr20 (10731532-10731726) | |
| 187-364, gnl|tetNig1|chr17 (3794236-3794053) | |
| 187-364, gnl|tetNig1|chr2 (14442857-14442663) | |
| 187-364, gnl|xenTro1|scaffold_124 (603663-603481) | |
| 187-364, gnl|xenTro1|scaffold_819 (4207-4405) | |
| 365-534, gnl|bosTau2|chr1 (91344240-91344409) | |
| 365-534, gnl|canFam2|chr31 (40204406-40204587) | |
| 365-534, gnl|danRer3|chr1 (48185925-48185743) | |
| 365-534, gnl|dasNov1|scaffold_113152 (221-39) | |
| 365-534, gnl|echTel1|scaffold_311417 (75404-75598) | |
| 365-534, gnl|fr1|chrUn (50777560-50777380) | |
| 365-534, gnl|galGal2|chr1 (103933127-103933310) | |
| 365-534, gnl|hg17|chr21 (44212249-44212447) | |
| 365-534, gnl|Hg17|chr21 (44212255-44212424) | |
| 365-534, gnl|loxAfr1|scaffold_27342 (6984-6790) | |
| 365-534, gnl|mm7|chr10 (77939773-77939595) | |
| 365-534, gnl|Mm7|chr10 (77939768-77939599) | |
| 365-534, gnl|monDom2|scaffold_29 (10338255-10338439) | |
| 365-534, gnl|oryCun1|scaffold_145325 (2020-1842) | |
| 365-534, gnl|panTro1|chr22 (44350585-44350783) | |
| 365-534, gnl|rheMac2|chr3 (2764477-2764279) | |
| 365-534, gnl|rn3|chr20 (10735058-10735236) | |
| 365-534, gnl|tetNig1|chr2 (14442507-14442318) | |
| 365-534, gnl|xenTro1|scaffold_819 (6450-6629) | |
| 538-687, gnl|bosTau2|chr9 (58934704-58934555) | |
| 538-687, gnl|Hg17|chr6 (161545750-161545601) | |
| 538-687, gnl|Mm7|chr17 (10927676-10927825) | |
| 696-850, gnl|bosTau2|chr1 (91346081-91346235) | |
| 696-850, gnl|canFam2|chr31 (40206291-40206483) | |
| 696-850, gnl|danRer3|chr1 (48180376-48180207) | |
| 696-850, gnl|dasNov1|scaffold_8434 (99378-99214) | |
| 696-850, gnl|echTel1|scaffold_311417 (76834-77011) | |
| 696-850, gnl|fr1|chrUn (50776475-50776296) | |
| 696-850, gnl|galGal2|chr1 (103937223-103937385) | |
| 696-850, gnl|hg17|chr21 (44214957-44215154) | |
| 696-850, gnl|Hg17|chr21 (44214961-44215115) | |
| 696-850, gnl|loxAfr1|scaffold_27342 (4459-4263) | |
| 696-850, gnl|mm7|chr10 (77937859-77937695) | |
| 696-850, gnl|Mm7|chr10 (77937853-77937699) | |
| 696-850, gnl|monDom2|scaffold_29 (10351537-10351707) | |
| 696-850, gnl|panTro1|chr22 (44353308-44353505) | |
| 696-850, gnl|rheMac2|chr3 (2761179-2760982) | |
| 696-850, gnl|rn3|chr20 (10736993-10737192) | |
| 696-850, gnl|tetNig1|chr2 (14441488-14441298) | |
| 696-850, gnl|xenTro1|scaffold_819 (7395-7571) | |
| 1028-1152, gnl|bosTau2|chr1 (91354102-91354226) | |
| 1028-1152, gnl|canFam2|chr31 (40214494-40214718) | |
| 1028-1152, gnl|danRer3|chr1 (48173553-48173356) | |
| 1028-1152, gnl|dasNov1|scaffold_213427 (3755-3982) | |
| 1028-1152, gnl|echTel1|scaffold_311417 (84908-85138) | |
| 1028-1152, gnl|fr1|chrUn (50775606-50775384) | |
| 1028-1152, gnl|galGal2|chr1 (103942289-103942509) | |
| 1028-1152, gnl|hg17|chr21 (44225280-44225510) | |
| 1028-1152, gnl|Hg17|chr21 (44225296-44225420) | |
| 1028-1152, gnl|loxAfr1|scaffold_4654 (73114-72884) | |
| 1028-1152, gnl|mm7|chr10 (77928883-77928664) | |
| 1028-1152, gnl|Mm7|chr10 (77928876-77928752) | |
| 1028-1152, gnl|monDom2|scaffold_29 (10359292-10359519) | |
| 1028-1152, gnl|oryCun1|scaffold_98265 (14400-14208) | |
| 1028-1152, gnl|panTro1|chr22 (44363985-44364215) | |
| 1028-1152, gnl|rheMac2|chr3 (2747309-2747079) | |
| 1028-1152, gnl|rn3|chr20 (10746775-10746994) | |
| 1028-1152, gnl|tetNig1|chr2 (14440488-14440279) | |
| 1028-1152, gnl|xenTro1|scaffold_819 (8446-8666) |
| Aligned organism(s): 92 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 187-364, gnl|bosTau2|chr9 (59000081-58999904) | |
| 187-364, gnl|canFam2|chr1 (52844034-52844219) | |
| 187-364, gnl|canFam2|chr31 (40197527-40197715) | |
| 187-364, gnl|danRer3|chr1 (48188897-48188711) | |
| 187-364, gnl|danRer3|chr13 (38419485-38419302) | |
| 187-364, gnl|dasNov1|scaffold_99651 (43026-42833) | |
| 187-364, gnl|echTel1|scaffold_246379 (1361-1171) | |
| 187-364, gnl|echTel1|scaffold_296952 (119837-119652) | |
| 187-364, gnl|fr1|chrUn (50778072-50777876) | |
| 187-364, gnl|fr1|chrUn (160710296-160710111) | |
| 187-364, gnl|galGal2|chr1 (103927701-103927893) | |
| 187-364, gnl|galGal2|chr3 (41309414-41309229) | |
| 187-364, gnl|hg17|chr21 (44203988-44204185) | |
| 187-364, gnl|hg17|chr6 (161623475-161623660) | |
| 187-364, gnl|Hg17|chr6 (161623656-161623479) | |
| 187-364, gnl|loxAfr1|scaffold_27342 (15217-15024) | |
| 187-364, gnl|loxAfr1|scaffold_27342 (15030-15215) | |
| 187-364, gnl|mm7|chr10 (77942634-77942443) | |
| 187-364, gnl|mm7|chr17 (10869417-10869232) | |
| 187-364, gnl|Mm7|chr17 (10869234-10869411) | |
| 187-364, gnl|monDom2|scaffold_0 (42323581-42323396) | |
| 187-364, gnl|monDom2|scaffold_29 (10318596-10318789) | |
| 187-364, gnl|oryCun1|scaffold_86750 (1994-2183) | |
| 187-364, gnl|oryCun1|scaffold_86750 (2179-1994) | |
| 187-364, gnl|panTro1|chr5 (165709016-165709201) | |
| 187-364, gnl|rheMac2|chr4 (158043979-158043793) | |
| 187-364, gnl|rheMac2|chr4 (158043793-158043978) | |
| 187-364, gnl|rn3|chr1 (43065690-43065875) | |
| 187-364, gnl|rn3|chr20 (10731532-10731726) | |
| 187-364, gnl|tetNig1|chr17 (3794236-3794053) | |
| 187-364, gnl|tetNig1|chr2 (14442857-14442663) | |
| 187-364, gnl|xenTro1|scaffold_124 (603663-603481) | |
| 187-364, gnl|xenTro1|scaffold_819 (4207-4405) | |
| 365-534, gnl|bosTau2|chr1 (91344240-91344409) | |
| 365-534, gnl|canFam2|chr31 (40204406-40204587) | |
| 365-534, gnl|danRer3|chr1 (48185925-48185743) | |
| 365-534, gnl|dasNov1|scaffold_113152 (221-39) | |
| 365-534, gnl|echTel1|scaffold_311417 (75404-75598) | |
| 365-534, gnl|fr1|chrUn (50777560-50777380) | |
| 365-534, gnl|galGal2|chr1 (103933127-103933310) | |
| 365-534, gnl|hg17|chr21 (44212249-44212447) | |
| 365-534, gnl|Hg17|chr21 (44212255-44212424) | |
| 365-534, gnl|loxAfr1|scaffold_27342 (6984-6790) | |
| 365-534, gnl|mm7|chr10 (77939773-77939595) | |
| 365-534, gnl|Mm7|chr10 (77939768-77939599) | |
| 365-534, gnl|monDom2|scaffold_29 (10338255-10338439) | |
| 365-534, gnl|oryCun1|scaffold_145325 (2020-1842) | |
| 365-534, gnl|panTro1|chr22 (44350585-44350783) | |
| 365-534, gnl|rheMac2|chr3 (2764477-2764279) | |
| 365-534, gnl|rn3|chr20 (10735058-10735236) | |
| 365-534, gnl|tetNig1|chr2 (14442507-14442318) | |
| 365-534, gnl|xenTro1|scaffold_819 (6450-6629) | |
| 538-687, gnl|bosTau2|chr9 (58934704-58934555) | |
| 538-687, gnl|Hg17|chr6 (161545750-161545601) | |
| 538-687, gnl|Mm7|chr17 (10927676-10927825) | |
| 696-850, gnl|bosTau2|chr1 (91346081-91346235) | |
| 696-850, gnl|canFam2|chr31 (40206291-40206483) | |
| 696-850, gnl|danRer3|chr1 (48180376-48180207) | |
| 696-850, gnl|dasNov1|scaffold_8434 (99378-99214) | |
| 696-850, gnl|echTel1|scaffold_311417 (76834-77011) | |
| 696-850, gnl|fr1|chrUn (50776475-50776296) | |
| 696-850, gnl|galGal2|chr1 (103937223-103937385) | |
| 696-850, gnl|hg17|chr21 (44214957-44215154) | |
| 696-850, gnl|Hg17|chr21 (44214961-44215115) | |
| 696-850, gnl|loxAfr1|scaffold_27342 (4459-4263) | |
| 696-850, gnl|mm7|chr10 (77937859-77937695) | |
| 696-850, gnl|Mm7|chr10 (77937853-77937699) | |
| 696-850, gnl|monDom2|scaffold_29 (10351537-10351707) | |
| 696-850, gnl|panTro1|chr22 (44353308-44353505) | |
| 696-850, gnl|rheMac2|chr3 (2761179-2760982) | |
| 696-850, gnl|rn3|chr20 (10736993-10737192) | |
| 696-850, gnl|tetNig1|chr2 (14441488-14441298) | |
| 696-850, gnl|xenTro1|scaffold_819 (7395-7571) | |
| 1028-1152, gnl|bosTau2|chr1 (91354102-91354226) | |
| 1028-1152, gnl|canFam2|chr31 (40214494-40214718) | |
| 1028-1152, gnl|danRer3|chr1 (48173553-48173356) | |
| 1028-1152, gnl|dasNov1|scaffold_213427 (3755-3982) | |
| 1028-1152, gnl|echTel1|scaffold_311417 (84908-85138) | |
| 1028-1152, gnl|fr1|chrUn (50775606-50775384) | |
| 1028-1152, gnl|galGal2|chr1 (103942289-103942509) | |
| 1028-1152, gnl|hg17|chr21 (44225280-44225510) | |
| 1028-1152, gnl|Hg17|chr21 (44225296-44225420) | |
| 1028-1152, gnl|loxAfr1|scaffold_4654 (73114-72884) | |
| 1028-1152, gnl|mm7|chr10 (77928883-77928664) | |
| 1028-1152, gnl|Mm7|chr10 (77928876-77928752) | |
| 1028-1152, gnl|monDom2|scaffold_29 (10359292-10359519) | |
| 1028-1152, gnl|oryCun1|scaffold_98265 (14400-14208) | |
| 1028-1152, gnl|panTro1|chr22 (44363985-44364215) | |
| 1028-1152, gnl|rheMac2|chr3 (2747309-2747079) | |
| 1028-1152, gnl|rn3|chr20 (10746775-10746994) | |
| 1028-1152, gnl|tetNig1|chr2 (14440488-14440279) | |
| 1028-1152, gnl|xenTro1|scaffold_819 (8446-8666) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nlu (0.383362) | |
| nep (0.183925) | |
| cut (0.169924) | |
| cli (0.152812) | |
| ste (0.135208) | |
| cly (0.120642) | |
| pgl (0.118483) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) | |
| nep (0.183925) | |
| cut (0.169924) | |
| cli (0.152812) | |
| ste (0.135208) | |
| cly (0.120642) | |
| pgl (0.118483) |