Non-Coding RNA Search

Ss1.1-Liv1-LVR010003C10.5

Sequence:


               
               AAAGCCAGGCGGGCTTCCTTAGAGACACTTTGGGGGGCAAGGTGAAATGGGGAGAATTTT
ATATCCTTGGAATTAGATTGCCTGGGTTTCTTCATACTTAGAGATAGAGACCTTTCCTGT
CCGTGCCCTTTCCCCCCTCCCGCAAAAAAAAACCCTACTCCGCGCCGTAGGAATCGAGCC
CTTTTGACTTCTCCGGCGCGCCGTCGTCGGGGAAGTCTGGGGCATTGGCCTTGCCCTTCC
CATCCTCCCGCGGACGTCCGACTGTACCCGCTGCCATGGCGACGCTGCTGCGCGGGGCCC
TGCGCCCCCTCCGCGCCTTCCAAGGCCGCGGGCAGCCGGCTGCAGGCAAGTGGCGGGGGC
TGGTCGGCGTGCTGGCGTCCCCCGGCTCTTTTGACCGCGCGGCCTTTTTCTTGCCTCGCA
GATGTGCCCCTTCGTGCCACGAGCCATGGCACCGGCCTCCTCTACCCCGAACACATCCCC
ACTTCCCTGCTGCAGAAGGCGCTGTTGGCCGCGGGCTCTGCCGTAATGGCCCTCTACGAC
CCTTATCGCCACGGTAAGGCTGCCCGCGCCTGGCGTTCTCTTGGGAGGGCGGGGGAGGGG
GGAGGCTCACCCTTGCCTTGGAAGTCCCGGGGAGGTCCCTGCCACTGTCAAAACCTCCGT
TTCCTTTGGGTAACTGGAAACAAGACAAGGCCAGGGTACCCAGACCAAGCTGCACCTCAC
AGTCACTTGCAGTATTCATAAAATGCGGATGCCTGGATCCCACCCTAAAACTTACTCAAT
TCGAATCTTGTGGGAGTGGGGAAGGGAGGCAGGAAGGGGCGTGGAATCTGAGCCTCTGCC
TTTTTAAACTGCTTCCCGGGAGATTCTGTCATCCAGCCACACTGAGGATCTCTGGGCTAG
ATGATTTATGCCCGTAAAAGTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGCCAGGCGGGCTTCCTTAGAGACACTTTGGGGGGCAAGGTGAAATGGGGAGAATTTT
ATATCCTTGGAATTAGATTGCCTGGGTTTCTTCATACTTAGAGATAGAGACCTTTCCTGT
CCGTGCCCTTTCCCCCCTCCCGCAAAAAAAAACCCTACTCCGCGCCGTAGGAATCGAGCC
CTTTTGACTTCTCCGGCGCGCCGTCGTCGGGGAAGTCTGGGGCATTGGCCTTGCCCTTCC
CATCCTCCCGCGGACGTCCGACTGTACCCGCTGCCATGGCGACGCTGCTGCGCGGGGCCC
TGCGCCCCCTCCGCGCCTTCCAAGGCCGCGGGCAGCCGGCTGCAGGCAAGTGGCGGGGGC
TGGTCGGCGTGCTGGCGTCCCCCGGCTCTTTTGACCGCGCGGCCTTTTTCTTGCCTCGCA
GATGTGCCCCTTCGTGCCACGAGCCATGGCACCGGCCTCCTCTACCCCGAACACATCCCC
ACTTCCCTGCTGCAGAAGGCGCTGTTGGCCGCGGGCTCTGCCGTAATGGCCCTCTACGAC
CCTTATCGCCACGGTAAGGCTGCCCGCGCCTGGCGTTCTCTTGGGAGGGCGGGGGAGGGG
GGAGGCTCACCCTTGCCTTGGAAGTCCCGGGGAGGTCCCTGCCACTGTCAAAACCTCCGT
TTCCTTTGGGTAACTGGAAACAAGACAAGGCCAGGGTACCCAGACCAAGCTGCACCTCAC
AGTCACTTGCAGTATTCATAAAATGCGGATGCCTGGATCCCACCCTAAAACTTACTCAAT
TCGAATCTTGTGGGAGTGGGGAAGGGAGGCAGGAAGGGGCGTGGAATCTGAGCCTCTGCC
TTTTTAAACTGCTTCCCGGGAGATTCTGTCATCCAGCCACACTGAGGATCTCTGGGCTAG
ATGATTTATGCCCGTAAAAGTATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               130-219, - strand, RNAz p=0.959105

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               130-219, - strand, RNAz p=0.959105

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               8-219, gnl|bosTau2|chr11 (78205781-78206001)
               

               
               8-219, gnl|Hg17|chr9 (128164419-128164647)
               

               
               8-219, gnl|Mm7|chr2 (29795124-29795550)
               


               
               247-585, gnl|bosTau2|chr11 (78206057-78206406)
               

               
               247-585, gnl|Hg17|chr9 (128164673-128164999)
               

               
               247-585, gnl|Mm7|chr2 (29795577-29795900)
               


               
               610-910, gnl|bosTau2|chr11 (78206699-78206996)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-219, gnl|bosTau2|chr11 (78205781-78206001)
               

               
               8-219, gnl|Hg17|chr9 (128164419-128164647)
               

               
               8-219, gnl|Mm7|chr2 (29795124-29795550)
               


               
               247-585, gnl|bosTau2|chr11 (78206057-78206406)
               

               
               247-585, gnl|Hg17|chr9 (128164673-128164999)
               

               
               247-585, gnl|Mm7|chr2 (29795577-29795900)
               


               
               610-910, gnl|bosTau2|chr11 (78206699-78206996)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)
               

               
               jej (0.0989218)

	8-219, gnl\|bosTau2\|chr11 (78205781-78206001)
	8-219, gnl\|Hg17\|chr9 (128164419-128164647)
	8-219, gnl\|Mm7\|chr2 (29795124-29795550)

	247-585, gnl\|bosTau2\|chr11 (78206057-78206406)
	247-585, gnl\|Hg17\|chr9 (128164673-128164999)
	247-585, gnl\|Mm7\|chr2 (29795577-29795900)

	610-910, gnl\|bosTau2\|chr11 (78206699-78206996)