Non-Coding RNA Search

Ss1.1-Liv1-LVR010003E05.5

Sequence:


               
               CAACATGGCGGCCTCCATAGGCCGCTGCCTTCTCTTCCTCATTGCGCTGTGCCATTTCCT
CGGTGAGGCGTCCGGCTACCTCGGCTTAGGGGCCTCCCGCGACGACGACTTGCTGCTGCC
TTACCCCCGTGCGCGCACGCGCTTCTCCCGGGACTGCACAAGGGTGCGCGCCGGCCGCCG
AGAGCATGAGAGCTGGCTGCCATCCTCCGCGACCCCCAGCGCCCGCGGCCCCTCAGTGCG
CACTTTCGTCTCACACTTTTCAGGCCGCGCAGTTGCGGGCCACCTGACACGGGCCGCCGA
GCCCCTGCGCACCTTCTCGGTACTGGAGCCTGGCGGACCCGGCGGCTGCGCGTCGAGGCG
CCGCGTGACGGTGGAAGAGACTGCGCGGGAGGCCGGCTGCAGCGTTGCTCAGAACGGCGG
CTTCTTCCGCATGGACACTGGCGAGTGCCTGGGGAACGTTGTGAGCGACGGGCGGCTGGT
GGGGAACGCCGAGGGGCTGCAGAACGCGCAGTTCGGGATCCGCCGCGACGGGACCCTCGT
CACTGGGTACCTGTCTGAAGAGGAGGTTCTGGACACTGAGAACCCCTTTGTGCAGCTGCT
GAGTGGGGTCGTGTGGCTGATTCGCAATGGAAGTATCCACATCAATGAGAGTCAGGCGGC
TGAGTGTGACGAGACACAGGAGACAGGTTCCTTCAGCAAATTTATAAACGTGATATCGGC
CCGGACAGCTGTGGGCCACGACCGGAAGGGGCAGCTGGTGCTCTTCCATGTGGACGGGCA
GACAGAGCAGCGGGGCATCAACCTGTGGGAAATGGCAGAGTTCCTGCTGAAACAGGACGT
GGTTAACGCCATCAACCTGGACGGAGGGGGCTCCGCCACCTTCGTGCTCAACGGGACCTT
GGCCAGTTACCCGTCTGATCACTGCCAGGACAACATGTGGCGCTGTCCCCGCAGCGTGTC
CACTGTGGTGTGCGTGCACGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACATGGCGGCCTCCATAGGCCGCTGCCTTCTCTTCCTCATTGCGCTGTGCCATTTCCT
CGGTGAGGCGTCCGGCTACCTCGGCTTAGGGGCCTCCCGCGACGACGACTTGCTGCTGCC
TTACCCCCGTGCGCGCACGCGCTTCTCCCGGGACTGCACAAGGGTGCGCGCCGGCCGCCG
AGAGCATGAGAGCTGGCTGCCATCCTCCGCGACCCCCAGCGCCCGCGGCCCCTCAGTGCG
CACTTTCGTCTCACACTTTTCAGGCCGCGCAGTTGCGGGCCACCTGACACGGGCCGCCGA
GCCCCTGCGCACCTTCTCGGTACTGGAGCCTGGCGGACCCGGCGGCTGCGCGTCGAGGCG
CCGCGTGACGGTGGAAGAGACTGCGCGGGAGGCCGGCTGCAGCGTTGCTCAGAACGGCGG
CTTCTTCCGCATGGACACTGGCGAGTGCCTGGGGAACGTTGTGAGCGACGGGCGGCTGGT
GGGGAACGCCGAGGGGCTGCAGAACGCGCAGTTCGGGATCCGCCGCGACGGGACCCTCGT
CACTGGGTACCTGTCTGAAGAGGAGGTTCTGGACACTGAGAACCCCTTTGTGCAGCTGCT
GAGTGGGGTCGTGTGGCTGATTCGCAATGGAAGTATCCACATCAATGAGAGTCAGGCGGC
TGAGTGTGACGAGACACAGGAGACAGGTTCCTTCAGCAAATTTATAAACGTGATATCGGC
CCGGACAGCTGTGGGCCACGACCGGAAGGGGCAGCTGGTGCTCTTCCATGTGGACGGGCA
GACAGAGCAGCGGGGCATCAACCTGTGGGAAATGGCAGAGTTCCTGCTGAAACAGGACGT
GGTTAACGCCATCAACCTGGACGGAGGGGGCTCCGCCACCTTCGTGCTCAACGGGACCTT
GGCCAGTTACCCGTCTGATCACTGCCAGGACAACATGTGGCGCTGTCCCCGCAGCGTGTC
CACTGTGGTGTGCGTGCACGAGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15082577|gb|AAH12194.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15082577|gb|AAH12194.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               170-924, + strand, RNAz p=0.99225

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               170-924, + strand, RNAz p=0.99225

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               90-548, gnl|bosTau2|chr25 (4890156-4889695)
               

               
               90-548, gnl|Hg17|chr16 (5023731-5023273)
               

               
               90-548, gnl|Mm7|chr16 (4877042-4876581)
               


               
               795-924, gnl|bosTau2|chr25 (4886590-4886461)
               

               
               795-924, gnl|Hg17|chr16 (5019011-5018882)
               

               
               795-924, gnl|Mm7|chr16 (4872987-4872858)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-548, gnl|bosTau2|chr25 (4890156-4889695)
               

               
               90-548, gnl|Hg17|chr16 (5023731-5023273)
               

               
               90-548, gnl|Mm7|chr16 (4877042-4876581)
               


               
               795-924, gnl|bosTau2|chr25 (4886590-4886461)
               

               
               795-924, gnl|Hg17|chr16 (5019011-5018882)
               

               
               795-924, gnl|Mm7|chr16 (4872987-4872858)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               cty (0.10408)

	90-548, gnl\|bosTau2\|chr25 (4890156-4889695)
	90-548, gnl\|Hg17\|chr16 (5023731-5023273)
	90-548, gnl\|Mm7\|chr16 (4877042-4876581)

	795-924, gnl\|bosTau2\|chr25 (4886590-4886461)
	795-924, gnl\|Hg17\|chr16 (5019011-5018882)
	795-924, gnl\|Mm7\|chr16 (4872987-4872858)