Ss1.1-Liv1-LVR010003H11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTTGGCTCCTCCCTCTCCAAGATGGCGTCCCTGCTGCAGTCGGAGCGGGTTCTCTACCT AGTCCAGGGAGAAAAGAAGGTTCGGGCCCCGCTCTCGCAGCTTTACTTCTGTCGCTATTG CAGCGAGCTGCGATCGCTGGAATGTGTGTCTCACGAGGTGGACTCTCATTATTGTCCCAG TTGTTTAGAAAATATGCCATCGGCTGAAGCCAAACTAAAAAAAAATAGGTGCGCCAACTG CTTCGACTGTCCCGGCTGCATGCACACCCTCTCCACGCGGGCAACGAGCATCTCCACCCA GCTCCCAGATGACCCGGCCAAGACCGCCGTCAAGAAAGCCTATTATCTGGCCTGTGGATT CTGTCGCTGGACATCCAGAGATGTGGGCATGGCAGACAAATCTGTGGCTAGTGGTGGTTG GCAGGAACCTGACCATCCTCACACGCAGCGGATGAACAAACTGATTGAATATTACCAGCA GCTTGCTCAGAAGGAGAAGGTTGAACGAGATCGCAAGAAGCTGGCGCGGCGTAGAAACTA CATGCCTTTGGCTTTCTCGGACAAATACGGTCTTGGAACCAGACTTCAGCGACCACGAGC TGGCACAACCATCACTGCCCTTGCCGGACTTTCCCTGAAGAACCGAGGGGACCAGAAGGA GATAAAGATTGAGCCAGCTCAGGCTGTGGATGAAGTGGAACCTCTGCCTTCACATACCTA CACGAGACCAGTCAACCTAACAGAGGTGACCACCCTTCAGCAGCGCCTCTTGCAGCCTGA CTTCCAGCCCATCTGTGCCTCCCAGCTCTATCCTCGGCACAAGCATCTTCTGATCAAACG GTCCCTGCGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTTGGCTCCTCCCTCTCCAAGATGGCGTCCCTGCTGCAGTCGGAGCGGGTTCTCTACCT AGTCCAGGGAGAAAAGAAGGTTCGGGCCCCGCTCTCGCAGCTTTACTTCTGTCGCTATTG CAGCGAGCTGCGATCGCTGGAATGTGTGTCTCACGAGGTGGACTCTCATTATTGTCCCAG TTGTTTAGAAAATATGCCATCGGCTGAAGCCAAACTAAAAAAAAATAGGTGCGCCAACTG CTTCGACTGTCCCGGCTGCATGCACACCCTCTCCACGCGGGCAACGAGCATCTCCACCCA GCTCCCAGATGACCCGGCCAAGACCGCCGTCAAGAAAGCCTATTATCTGGCCTGTGGATT CTGTCGCTGGACATCCAGAGATGTGGGCATGGCAGACAAATCTGTGGCTAGTGGTGGTTG GCAGGAACCTGACCATCCTCACACGCAGCGGATGAACAAACTGATTGAATATTACCAGCA GCTTGCTCAGAAGGAGAAGGTTGAACGAGATCGCAAGAAGCTGGCGCGGCGTAGAAACTA CATGCCTTTGGCTTTCTCGGACAAATACGGTCTTGGAACCAGACTTCAGCGACCACGAGC TGGCACAACCATCACTGCCCTTGCCGGACTTTCCCTGAAGAACCGAGGGGACCAGAAGGA GATAAAGATTGAGCCAGCTCAGGCTGTGGATGAAGTGGAACCTCTGCCTTCACATACCTA CACGAGACCAGTCAACCTAACAGAGGTGACCACCCTTCAGCAGCGCCTCTTGCAGCCTGA CTTCCAGCCCATCTGTGCCTCCCAGCTCTATCCTCGGCACAAGCATCTTCTGATCAAACG GTCCCTGCGCTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 1-159, gnl|bosTau2|chr7 (39380736-39380579) | |
| 1-159, gnl|canFam2|chr4 (61627067-61626927) | |
| 1-159, gnl|danRer3|chrNA (225605268-225605128) | |
| 1-159, gnl|dasNov1|scaffold_1683 (32155-32295) | |
| 1-159, gnl|echTel1|scaffold_129611 (488-628) | |
| 1-159, gnl|fr1|chrUn (109801546-109801408) | |
| 1-159, gnl|galGal2|chr13 (12011471-12011347) | |
| 1-159, gnl|hg17|chr5 (150118611-150118751) | |
| 1-159, gnl|Hg17|chr5 (150118770-150118612) | |
| 1-159, gnl|mm7|chr18 (60915809-60915669) | |
| 1-159, gnl|Mm7|chr18 (60915648-60915806) | |
| 1-159, gnl|monDom2|scaffold_6 (57047218-57047358) | |
| 1-159, gnl|oryCun1|scaffold_184998 (54650-54735) | |
| 1-159, gnl|panTro1|chr4 (157070969-157071109) | |
| 1-159, gnl|rheMac2|chr6 (147230268-147230408) | |
| 1-159, gnl|rn3|chr18 (56550556-56550416) | |
| 1-159, gnl|tetNig1|chr1 (2503657-2503518) | |
| 226-413, gnl|bosTau2|chr7 (39375857-39375669) | |
| 226-413, gnl|canFam2|chr4 (61632626-61632412) | |
| 226-413, gnl|danRer3|chrNA (225610573-225610361) | |
| 226-413, gnl|dasNov1|scaffold_1683 (27038-27240) | |
| 226-413, gnl|echTel1|scaffold_104817 (2895-3116) | |
| 226-413, gnl|fr1|chrUn (109802601-109802393) | |
| 226-413, gnl|galGal2|chr13 (12013037-12012844) | |
| 226-413, gnl|hg17|chr5 (150113206-150113420) | |
| 226-413, gnl|Hg17|chr5 (150113415-150113227) | |
| 226-413, gnl|mm7|chr18 (60927905-60927697) | |
| 226-413, gnl|Mm7|chr18 (60927700-60927888) | |
| 226-413, gnl|monDom2|scaffold_6 (57029246-57029460) | |
| 226-413, gnl|oryCun1|scaffold_174228 (45969-45755) | |
| 226-413, gnl|panTro1|chr4 (157065530-157065744) | |
| 226-413, gnl|rheMac2|chr6 (147224497-147224711) | |
| 226-413, gnl|rn3|chr18 (56557604-56557406) | |
| 226-413, gnl|tetNig1|chr1 (2504655-2504469) | |
| 451-560, gnl|bosTau2|chr7 (39368797-39368688) | |
| 451-560, gnl|canFam2|chr4 (61639178-61639058) | |
| 451-560, gnl|danRer3|chrNA (225612559-225612441) | |
| 451-560, gnl|dasNov1|scaffold_1683 (20455-20575) | |
| 451-560, gnl|fr1|chrUn (109803043-109802928) | |
| 451-560, gnl|galGal2|chr13 (12014770-12014644) | |
| 451-560, gnl|hg17|chr5 (150093119-150093240) | |
| 451-560, gnl|Hg17|chr5 (150093231-150093122) | |
| 451-560, gnl|mm7|chr18 (60933591-60933471) | |
| 451-560, gnl|Mm7|chr18 (60933477-60933586) | |
| 451-560, gnl|monDom2|scaffold_6 (57015194-57015314) | |
| 451-560, gnl|oryCun1|scaffold_198196 (41045-40925) | |
| 451-560, gnl|panTro1|chr4 (157045440-157045561) | |
| 451-560, gnl|rheMac2|chr6 (147209421-147209542) | |
| 451-560, gnl|rn3|chr18 (56563348-56563228) | |
| 451-560, gnl|tetNig1|chr1 (2505264-2505146) | |
| 451-560, gnl|xenTro1|scaffold_261 (496657-496777) | |
| 746-852, gnl|bosTau2|chr7 (39366317-39366211) | |
| 746-852, gnl|canFam2|chr4 (61641549-61641403) | |
| 746-852, gnl|danRer3|chrNA (225623810-225623671) | |
| 746-852, gnl|dasNov1|scaffold_1683 (18166-18312) | |
| 746-852, gnl|echTel1|scaffold_170239 (1144-1000) | |
| 746-852, gnl|fr1|chrUn (109804865-109804732) | |
| 746-852, gnl|galGal2|chr13 (12017732-12017592) | |
| 746-852, gnl|hg17|chr5 (150090367-150090513) | |
| 746-852, gnl|Hg17|chr5 (150090496-150090390) | |
| 746-852, gnl|mm7|chr18 (60936334-60936191) | |
| 746-852, gnl|Mm7|chr18 (60936205-60936311) | |
| 746-852, gnl|monDom2|scaffold_6 (57012685-57012833) | |
| 746-852, gnl|oryCun1|scaffold_198196 (44107-43962) | |
| 746-852, gnl|panTro1|chr4 (157042693-157042839) | |
| 746-852, gnl|rheMac2|chr6 (147206603-147206749) | |
| 746-852, gnl|rn3|chr18 (56565934-56565791) | |
| 746-852, gnl|tetNig1|chr1 (2506806-2506675) | |
| 746-852, gnl|xenTro1|scaffold_261 (494438-494561) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-159, gnl|bosTau2|chr7 (39380736-39380579) | |
| 1-159, gnl|canFam2|chr4 (61627067-61626927) | |
| 1-159, gnl|danRer3|chrNA (225605268-225605128) | |
| 1-159, gnl|dasNov1|scaffold_1683 (32155-32295) | |
| 1-159, gnl|echTel1|scaffold_129611 (488-628) | |
| 1-159, gnl|fr1|chrUn (109801546-109801408) | |
| 1-159, gnl|galGal2|chr13 (12011471-12011347) | |
| 1-159, gnl|hg17|chr5 (150118611-150118751) | |
| 1-159, gnl|Hg17|chr5 (150118770-150118612) | |
| 1-159, gnl|mm7|chr18 (60915809-60915669) | |
| 1-159, gnl|Mm7|chr18 (60915648-60915806) | |
| 1-159, gnl|monDom2|scaffold_6 (57047218-57047358) | |
| 1-159, gnl|oryCun1|scaffold_184998 (54650-54735) | |
| 1-159, gnl|panTro1|chr4 (157070969-157071109) | |
| 1-159, gnl|rheMac2|chr6 (147230268-147230408) | |
| 1-159, gnl|rn3|chr18 (56550556-56550416) | |
| 1-159, gnl|tetNig1|chr1 (2503657-2503518) | |
| 226-413, gnl|bosTau2|chr7 (39375857-39375669) | |
| 226-413, gnl|canFam2|chr4 (61632626-61632412) | |
| 226-413, gnl|danRer3|chrNA (225610573-225610361) | |
| 226-413, gnl|dasNov1|scaffold_1683 (27038-27240) | |
| 226-413, gnl|echTel1|scaffold_104817 (2895-3116) | |
| 226-413, gnl|fr1|chrUn (109802601-109802393) | |
| 226-413, gnl|galGal2|chr13 (12013037-12012844) | |
| 226-413, gnl|hg17|chr5 (150113206-150113420) | |
| 226-413, gnl|Hg17|chr5 (150113415-150113227) | |
| 226-413, gnl|mm7|chr18 (60927905-60927697) | |
| 226-413, gnl|Mm7|chr18 (60927700-60927888) | |
| 226-413, gnl|monDom2|scaffold_6 (57029246-57029460) | |
| 226-413, gnl|oryCun1|scaffold_174228 (45969-45755) | |
| 226-413, gnl|panTro1|chr4 (157065530-157065744) | |
| 226-413, gnl|rheMac2|chr6 (147224497-147224711) | |
| 226-413, gnl|rn3|chr18 (56557604-56557406) | |
| 226-413, gnl|tetNig1|chr1 (2504655-2504469) | |
| 451-560, gnl|bosTau2|chr7 (39368797-39368688) | |
| 451-560, gnl|canFam2|chr4 (61639178-61639058) | |
| 451-560, gnl|danRer3|chrNA (225612559-225612441) | |
| 451-560, gnl|dasNov1|scaffold_1683 (20455-20575) | |
| 451-560, gnl|fr1|chrUn (109803043-109802928) | |
| 451-560, gnl|galGal2|chr13 (12014770-12014644) | |
| 451-560, gnl|hg17|chr5 (150093119-150093240) | |
| 451-560, gnl|Hg17|chr5 (150093231-150093122) | |
| 451-560, gnl|mm7|chr18 (60933591-60933471) | |
| 451-560, gnl|Mm7|chr18 (60933477-60933586) | |
| 451-560, gnl|monDom2|scaffold_6 (57015194-57015314) | |
| 451-560, gnl|oryCun1|scaffold_198196 (41045-40925) | |
| 451-560, gnl|panTro1|chr4 (157045440-157045561) | |
| 451-560, gnl|rheMac2|chr6 (147209421-147209542) | |
| 451-560, gnl|rn3|chr18 (56563348-56563228) | |
| 451-560, gnl|tetNig1|chr1 (2505264-2505146) | |
| 451-560, gnl|xenTro1|scaffold_261 (496657-496777) | |
| 746-852, gnl|bosTau2|chr7 (39366317-39366211) | |
| 746-852, gnl|canFam2|chr4 (61641549-61641403) | |
| 746-852, gnl|danRer3|chrNA (225623810-225623671) | |
| 746-852, gnl|dasNov1|scaffold_1683 (18166-18312) | |
| 746-852, gnl|echTel1|scaffold_170239 (1144-1000) | |
| 746-852, gnl|fr1|chrUn (109804865-109804732) | |
| 746-852, gnl|galGal2|chr13 (12017732-12017592) | |
| 746-852, gnl|hg17|chr5 (150090367-150090513) | |
| 746-852, gnl|Hg17|chr5 (150090496-150090390) | |
| 746-852, gnl|mm7|chr18 (60936334-60936191) | |
| 746-852, gnl|Mm7|chr18 (60936205-60936311) | |
| 746-852, gnl|monDom2|scaffold_6 (57012685-57012833) | |
| 746-852, gnl|oryCun1|scaffold_198196 (44107-43962) | |
| 746-852, gnl|panTro1|chr4 (157042693-157042839) | |
| 746-852, gnl|rheMac2|chr6 (147206603-147206749) | |
| 746-852, gnl|rn3|chr18 (56565934-56565791) | |
| 746-852, gnl|tetNig1|chr1 (2506806-2506675) | |
| 746-852, gnl|xenTro1|scaffold_261 (494438-494561) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) |