Non-Coding RNA Search

Ss1.1-Liv1-LVR010004A09.5

Sequence:


               
               AGATCCCTTCCTCCCCCTGCCCCCGTCACGCGAGGCTGCGGCGCACGGTATGGGTGTGTT
TGTGTGTGTTTCTGTGGGGAGGGTGTTTGGAGGGAAGGTTACCGGGAGCTCCGCGGCCGC
TGGGGGGCAGGGGTGCCGGTGACGAAGATGGGGGTATTTTCTGTGTCTTCCACTTGGAAG
CCTCAATCCCCTCTTCAGCCACTCTAGGTACTTTTTGGGGCCCAGTCGAGGGGCGTCCCC
GGCCAAAGCGTCCCCATCCTTTTGGGAAGGCGGAACCCAACCTCGGGGCCGTCCCAGAGG
AGCGTGAGCGGGGAGTGCGCTAGCCAACTTGGCCGTCCGGATTCCGAGCCAGAGCAGCCT
CCGGCCTCAGTCCGGAGAAAAATCTGCCTGTCGGCCTGGGCTGGGGAGAGGCGGCGGTGG
CGAGGCCCACGGGTGAGGGCGGAATAACCGGTGGGAAGGCTGCGTTTTCACGAAGGACTC
GGGTGAAGCTGCAGAGCTGCCTTTGAGCCCTGACTCCTTGGCTTCCTGGGTCGGAGGAGA
TCTTGTAATGGAGTGGTTCTTCGTCTCACACTAACAAGATGCCTGATTTCCTCAGGATCA
AGGGATTGAAGAATGTCCCGAGTTCCCTTGGGGAAAGTCCTCCTGAGGAATGTCATCCGG
CACACAGATGCTCACAATAAGATTCAGGAGGAATCAGATATGTGGAAAATAAGAGAACTG
GAGAAACAGATGGAAGATGCTTACCGGGGCACCAAAAGAAAAATGTTACCCAGCAGTTCA
AGCCGGATGCGTAGTGATGGTTTTGATGAAGAAAGTCAAAGAGACTATTGGAGGCCAAAG
AATGAAATTTCTGGGGTACTGGATGATGATTTTCTTAAGGCTAAATCCTGGAATAAGAAG
CTGTATAATTATGAAGCTAACATGCCAGACAGATGGGGTCACAGTGGATATAAAGAGTTA
TACCCTGAAGAATTTGAAACAGACAGTAGTGATCAGCAAGATATTACCAATGGGAAAAAA
CCATCTCCCCAAGTAAAATCATCTACCCATGAATCTCACAAACATAAGAAGTCGAAGAAA
TCCCACAGAAAAAAGCAGAAAAAAAAGTCACACAAAAAACAGAAGAAAAGCAAAAAGGAA
GCCACAGATATAACAGCAGATTCCTCAAGTGAGTTCTCAGAAGAAACTGGGGCTTCTAGT
ACCAAGAAAAGGAAACAACCACATAAGCGCAAGAAAAAATCCAGGAAAAAGTCTCTCAAG
AAATCTGCTTTATTCTTAGAGGCAGAAAGTGACACTTCCCAGTCAGATGATTCTGCATCC
AGCAGTTCGGAGGAAAGTGAGGAAAGAGACACTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCCCTTCCTCCCCCTGCCCCCGTCACGCGAGGCTGCGGCGCACGGTATGGGTGTGTT
TGTGTGTGTTTCTGTGGGGAGGGTGTTTGGAGGGAAGGTTACCGGGAGCTCCGCGGCCGC
TGGGGGGCAGGGGTGCCGGTGACGAAGATGGGGGTATTTTCTGTGTCTTCCACTTGGAAG
CCTCAATCCCCTCTTCAGCCACTCTAGGTACTTTTTGGGGCCCAGTCGAGGGGCGTCCCC
GGCCAAAGCGTCCCCATCCTTTTGGGAAGGCGGAACCCAACCTCGGGGCCGTCCCAGAGG
AGCGTGAGCGGGGAGTGCGCTAGCCAACTTGGCCGTCCGGATTCCGAGCCAGAGCAGCCT
CCGGCCTCAGTCCGGAGAAAAATCTGCCTGTCGGCCTGGGCTGGGGAGAGGCGGCGGTGG
CGAGGCCCACGGGTGAGGGCGGAATAACCGGTGGGAAGGCTGCGTTTTCACGAAGGACTC
GGGTGAAGCTGCAGAGCTGCCTTTGAGCCCTGACTCCTTGGCTTCCTGGGTCGGAGGAGA
TCTTGTAATGGAGTGGTTCTTCGTCTCACACTAACAAGATGCCTGATTTCCTCAGGATCA
AGGGATTGAAGAATGTCCCGAGTTCCCTTGGGGAAAGTCCTCCTGAGGAATGTCATCCGG
CACACAGATGCTCACAATAAGATTCAGGAGGAATCAGATATGTGGAAAATAAGAGAACTG
GAGAAACAGATGGAAGATGCTTACCGGGGCACCAAAAGAAAAATGTTACCCAGCAGTTCA
AGCCGGATGCGTAGTGATGGTTTTGATGAAGAAAGTCAAAGAGACTATTGGAGGCCAAAG
AATGAAATTTCTGGGGTACTGGATGATGATTTTCTTAAGGCTAAATCCTGGAATAAGAAG
CTGTATAATTATGAAGCTAACATGCCAGACAGATGGGGTCACAGTGGATATAAAGAGTTA
TACCCTGAAGAATTTGAAACAGACAGTAGTGATCAGCAAGATATTACCAATGGGAAAAAA
CCATCTCCCCAAGTAAAATCATCTACCCATGAATCTCACAAACATAAGAAGTCGAAGAAA
TCCCACAGAAAAAAGCAGAAAAAAAAGTCACACAAAAAACAGAAGAAAAGCAAAAAGGAA
GCCACAGATATAACAGCAGATTCCTCAAGTGAGTTCTCAGAAGAAACTGGGGCTTCTAGT
ACCAAGAAAAGGAAACAACCACATAAGCGCAAGAAAAAATCCAGGAAAAAGTCTCTCAAG
AAATCTGCTTTATTCTTAGAGGCAGAAAGTGACACTTCCCAGTCAGATGATTCTGCATCC
AGCAGTTCGGAGGAAAGTGAGGAAAGAGACACTAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6ZUT1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6ZUT1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               550-666, - strand, RNAz p=0.897873
               

               
               1150-1356, - strand, RNAz p=0.940098

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               550-666, - strand, RNAz p=0.897873
               

               
               1150-1356, - strand, RNAz p=0.940098

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               490-1356, gnl|bosTau2|chrX (166084-166926)
               

               
               490-1356, gnl|Hg17|chr11 (111450738-111458768)
               

               
               490-1356, gnl|Mm7|chr10 (21779834-21779093)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               490-1356, gnl|bosTau2|chrX (166084-166926)
               

               
               490-1356, gnl|Hg17|chr11 (111450738-111458768)
               

               
               490-1356, gnl|Mm7|chr10 (21779834-21779093)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nlu (0.191681)
               

               
               ctl (0.153069)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               ctl (0.153069)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	550-666, - strand, RNAz p=0.897873
	1150-1356, - strand, RNAz p=0.940098

	490-1356, gnl\|bosTau2\|chrX (166084-166926)
	490-1356, gnl\|Hg17\|chr11 (111450738-111458768)
	490-1356, gnl\|Mm7\|chr10 (21779834-21779093)