Non-Coding RNA Search

Ss1.1-Liv1-LVR010004B11.5

Sequence:


               
               AAATTCCTTGCAGCTGGTCAGCCATCAACTACTTTAAAGACAGCTTCCATGAATACTTAG
CATCGGAAACGCTGCAGCTGGTCAGGGTCGCTGTGCCAGAGAGAACTGCAAGTACCTCCA
CCCTCCGCCCCACTTAAAAACGCAGCTGGAAATTAATGGACGGAACAATCTGATTCAACA
AAAGACGGCCGCAGCCATGTTCGCCCAGCAGATGCAGTTTATGCTCCAAAATGCTCAAAT
GTCATCACTTACTTCTTTTCCTGTGACTCCATCACTTGCAGCTAATCCTGCCATGGCTTA
CAATCCTTACTTACCTCATCCTGGGATGGGCCTGGTCCCTGCTGAACTTTTACCAAACGC
ACCTGTTCTGATTTCTGGAAACCCGCCTCTCGCACTGCCAGGAGCTGCTGGTCCAAAACT
GATGCGTTCAGATAAACTGGAGGTTTGCCGTGAGTTTCAGCGTGGAAATTGTACCCGTGG
TGAGAACGACTGCCGCTACGCTCACCCTACGGATGTCTCTATGATTGAGACAAGCGATAA
TACCGTGACCATCTGCATGGATTACATCAAAGGTCGATGCTCCCGTGAGAAATGCAAGTA
CTTTCATCCTCCTGCACACTTGCAAGCCAAACTCAAGGCAGCTCATCACCAGATGAACCA
TTCAGCTGCCACCGCGATGGCCCTACAGCCTGGTGCACTTCAGCTGATACCAAAGAGATC
GGCACTCGAAAAGACCAATGGTGCCACCCCGGTCTTTAATCCCAATGTTTTCCACTGCCA
ACAATCTCTGCCTAACCTGCAGCTCCCGCAGCCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTCCTTGCAGCTGGTCAGCCATCAACTACTTTAAAGACAGCTTCCATGAATACTTAG
CATCGGAAACGCTGCAGCTGGTCAGGGTCGCTGTGCCAGAGAGAACTGCAAGTACCTCCA
CCCTCCGCCCCACTTAAAAACGCAGCTGGAAATTAATGGACGGAACAATCTGATTCAACA
AAAGACGGCCGCAGCCATGTTCGCCCAGCAGATGCAGTTTATGCTCCAAAATGCTCAAAT
GTCATCACTTACTTCTTTTCCTGTGACTCCATCACTTGCAGCTAATCCTGCCATGGCTTA
CAATCCTTACTTACCTCATCCTGGGATGGGCCTGGTCCCTGCTGAACTTTTACCAAACGC
ACCTGTTCTGATTTCTGGAAACCCGCCTCTCGCACTGCCAGGAGCTGCTGGTCCAAAACT
GATGCGTTCAGATAAACTGGAGGTTTGCCGTGAGTTTCAGCGTGGAAATTGTACCCGTGG
TGAGAACGACTGCCGCTACGCTCACCCTACGGATGTCTCTATGATTGAGACAAGCGATAA
TACCGTGACCATCTGCATGGATTACATCAAAGGTCGATGCTCCCGTGAGAAATGCAAGTA
CTTTCATCCTCCTGCACACTTGCAAGCCAAACTCAAGGCAGCTCATCACCAGATGAACCA
TTCAGCTGCCACCGCGATGGCCCTACAGCCTGGTGCACTTCAGCTGATACCAAAGAGATC
GGCACTCGAAAAGACCAATGGTGCCACCCCGGTCTTTAATCCCAATGTTTTCCACTGCCA
ACAATCTCTGCCTAACCTGCAGCTCCCGCAGCCGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5JXP0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5JXP0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               563-680, - strand, RNAz p=0.696225

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               563-680, - strand, RNAz p=0.696225

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               99-250, gnl|bosTau2|chr17 (9708038-9707887)
               

               
               99-250, gnl|Mm7|chrX (46231607-46231456)
               


               
               441-680, gnl|bosTau2|chr17 (9689461-9689222)
               

               
               441-680, gnl|Hg17|chrX (131250648-131250409)
               

               
               441-680, gnl|Mm7|chrX (46222595-46222356)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-250, gnl|bosTau2|chr17 (9708038-9707887)
               

               
               99-250, gnl|Mm7|chrX (46231607-46231456)
               


               
               441-680, gnl|bosTau2|chr17 (9689461-9689222)
               

               
               441-680, gnl|Hg17|chrX (131250648-131250409)
               

               
               441-680, gnl|Mm7|chrX (46222595-46222356)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lun (0.300978)
               

               
               rec (0.17307)
               

               
               thg (0.126791)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.300978)
               

               
               rec (0.17307)
               

               
               thg (0.126791)

	99-250, gnl\|bosTau2\|chr17 (9708038-9707887)
	99-250, gnl\|Mm7\|chrX (46231607-46231456)

	441-680, gnl\|bosTau2\|chr17 (9689461-9689222)
	441-680, gnl\|Hg17\|chrX (131250648-131250409)
	441-680, gnl\|Mm7\|chrX (46222595-46222356)